Strain Fitness in Sinorhizobium meliloti 1021 around SMc01875

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01876 and SMc01875 are separated by 266 nucleotidesSMc01875 and SMc01874 are separated by 408 nucleotides SMc01876: SMc01876 - hypothetical protein, at 2,331,884 to 2,332,750 SMc01876 SMc01875: SMc01875 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,333,017 to 2,333,985 SMc01875 SMc01874: SMc01874 - cell division protein FtsZ, at 2,334,394 to 2,336,166 SMc01874 Position (kb) 2333 2334Strain fitness (log2 ratio) -1 0 1at 2332.804 kb on - strandat 2332.894 kb on + strandat 2332.894 kb on + strandat 2332.895 kb on - strandat 2332.895 kb on - strandat 2332.895 kb on - strandat 2332.895 kb on - strandat 2332.895 kb on - strandat 2332.954 kb on - strandat 2333.005 kb on + strandat 2333.011 kb on - strandat 2334.215 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
2,332,804 - -0.0
2,332,894 + -0.3
2,332,894 + -0.1
2,332,895 - +0.9
2,332,895 - -0.0
2,332,895 - +0.8
2,332,895 - -0.3
2,332,895 - +1.1
2,332,954 - -0.3
2,333,005 + -0.4
2,333,011 - -0.4
2,334,215 + -0.7

Or see this region's nucleotide sequence