Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01325 and SMc01324 are separated by 125 nucleotides SMc01324 and SMc01381 are separated by 245 nucleotides SMc01381 and SMc01323 are separated by 183 nucleotides SMc01323 and SMc01322 are separated by 16 nucleotides
SMc01325: SMc01325 - hypothetical protein, at 1,458,475 to 1,459,140
SMc01325
SMc01324: SMc01324 - oxidoreductase, at 1,459,266 to 1,460,156
SMc01324
SMc01381: SMc01381 - tRNA-Trp, at 1,460,402 to 1,460,477
SMc01381
SMc01323: SMc01323 - preprotein translocase subunit SecE, at 1,460,661 to 1,460,861
SMc01323
SMc01322: SMc01322 - transcription antitermination protein NusG, at 1,460,878 to 1,461,408
SMc01322
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-2
-1
0
1 at 1458.355 kb on - strand at 1458.355 kb on - strand at 1458.453 kb on + strand at 1458.453 kb on + strand at 1458.453 kb on + strand at 1458.453 kb on + strand at 1458.454 kb on - strand at 1458.454 kb on - strand at 1458.486 kb on + strand at 1458.577 kb on - strand, within SMc01325 at 1458.910 kb on + strand, within SMc01325 at 1458.910 kb on + strand, within SMc01325 at 1458.976 kb on - strand, within SMc01325 at 1458.976 kb on - strand, within SMc01325 at 1459.123 kb on + strand at 1459.125 kb on + strand at 1459.196 kb on + strand at 1459.197 kb on - strand at 1459.197 kb on - strand at 1459.197 kb on - strand at 1459.201 kb on - strand at 1459.201 kb on - strand at 1459.201 kb on - strand at 1459.201 kb on - strand at 1459.205 kb on + strand at 1459.206 kb on - strand at 1459.219 kb on + strand at 1459.219 kb on + strand at 1459.220 kb on - strand at 1459.220 kb on - strand at 1459.224 kb on + strand at 1459.261 kb on - strand at 1459.262 kb on + strand at 1459.263 kb on - strand at 1459.263 kb on - strand at 1459.263 kb on - strand at 1459.263 kb on - strand at 1459.263 kb on - strand at 1459.323 kb on + strand at 1459.323 kb on + strand at 1459.341 kb on + strand at 1459.342 kb on - strand at 1459.572 kb on + strand, within SMc01324 at 1459.573 kb on - strand, within SMc01324 at 1459.573 kb on - strand, within SMc01324 at 1459.573 kb on - strand, within SMc01324 at 1459.641 kb on + strand, within SMc01324 at 1459.641 kb on + strand, within SMc01324 at 1459.641 kb on + strand, within SMc01324 at 1459.642 kb on - strand, within SMc01324 at 1459.642 kb on - strand, within SMc01324 at 1459.642 kb on - strand, within SMc01324 at 1459.701 kb on + strand, within SMc01324 at 1459.701 kb on + strand, within SMc01324 at 1459.725 kb on + strand, within SMc01324 at 1459.726 kb on - strand, within SMc01324 at 1459.790 kb on + strand, within SMc01324 at 1459.794 kb on + strand, within SMc01324 at 1459.795 kb on - strand, within SMc01324 at 1459.795 kb on - strand, within SMc01324 at 1459.833 kb on + strand, within SMc01324 at 1459.833 kb on + strand, within SMc01324 at 1459.851 kb on + strand, within SMc01324 at 1459.852 kb on - strand, within SMc01324 at 1459.893 kb on + strand, within SMc01324 at 1459.893 kb on + strand, within SMc01324 at 1459.893 kb on + strand, within SMc01324 at 1459.894 kb on - strand, within SMc01324 at 1459.894 kb on - strand, within SMc01324 at 1459.894 kb on - strand, within SMc01324 at 1459.895 kb on + strand, within SMc01324 at 1459.896 kb on - strand, within SMc01324 at 1459.896 kb on - strand, within SMc01324 at 1459.896 kb on - strand, within SMc01324 at 1460.133 kb on - strand at 1460.136 kb on + strand at 1460.136 kb on + strand at 1460.136 kb on + strand at 1460.137 kb on - strand at 1460.137 kb on - strand at 1460.159 kb on + strand at 1460.159 kb on + strand at 1460.159 kb on + strand at 1460.160 kb on - strand at 1460.160 kb on - strand at 1460.160 kb on - strand at 1460.160 kb on - strand at 1460.206 kb on - strand at 1460.213 kb on + strand at 1460.533 kb on + strand at 1460.533 kb on + strand at 1460.533 kb on + strand at 1460.533 kb on + strand at 1460.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,458,355 - -0.3 1,458,355 - +0.2 1,458,453 + +0.9 1,458,453 + +0.5 1,458,453 + +0.2 1,458,453 + +0.3 1,458,454 - +1.0 1,458,454 - +0.3 1,458,486 + -0.6 1,458,577 - SMc01325 0.15 -0.5 1,458,910 + SMc01325 0.65 -0.0 1,458,910 + SMc01325 0.65 -0.4 1,458,976 - SMc01325 0.75 -0.4 1,458,976 - SMc01325 0.75 -0.2 1,459,123 + -0.5 1,459,125 + -0.5 1,459,196 + -1.7 1,459,197 - -0.2 1,459,197 - +0.3 1,459,197 - -0.1 1,459,201 - +1.1 1,459,201 - -0.2 1,459,201 - -0.1 1,459,201 - +0.1 1,459,205 + -0.6 1,459,206 - +0.2 1,459,219 + +0.4 1,459,219 + -1.2 1,459,220 - +0.7 1,459,220 - -0.0 1,459,224 + +0.4 1,459,261 - +0.4 1,459,262 + +0.2 1,459,263 - +0.6 1,459,263 - +0.0 1,459,263 - +0.4 1,459,263 - +0.6 1,459,263 - +0.7 1,459,323 + -0.6 1,459,323 + +0.7 1,459,341 + -0.4 1,459,342 - -0.3 1,459,572 + SMc01324 0.34 -0.1 1,459,573 - SMc01324 0.34 +0.7 1,459,573 - SMc01324 0.34 +0.0 1,459,573 - SMc01324 0.34 -0.2 1,459,641 + SMc01324 0.42 +0.6 1,459,641 + SMc01324 0.42 +0.4 1,459,641 + SMc01324 0.42 -0.3 1,459,642 - SMc01324 0.42 +0.2 1,459,642 - SMc01324 0.42 +1.5 1,459,642 - SMc01324 0.42 +0.2 1,459,701 + SMc01324 0.49 -0.7 1,459,701 + SMc01324 0.49 +1.3 1,459,725 + SMc01324 0.52 -0.4 1,459,726 - SMc01324 0.52 +0.5 1,459,790 + SMc01324 0.59 +1.0 1,459,794 + SMc01324 0.59 +0.3 1,459,795 - SMc01324 0.59 +0.5 1,459,795 - SMc01324 0.59 +0.4 1,459,833 + SMc01324 0.64 -0.2 1,459,833 + SMc01324 0.64 +0.9 1,459,851 + SMc01324 0.66 -0.4 1,459,852 - SMc01324 0.66 +0.8 1,459,893 + SMc01324 0.70 +1.0 1,459,893 + SMc01324 0.70 +0.3 1,459,893 + SMc01324 0.70 +0.4 1,459,894 - SMc01324 0.70 +0.5 1,459,894 - SMc01324 0.70 +0.1 1,459,894 - SMc01324 0.70 -1.9 1,459,895 + SMc01324 0.71 +0.1 1,459,896 - SMc01324 0.71 +0.1 1,459,896 - SMc01324 0.71 -1.2 1,459,896 - SMc01324 0.71 +0.5 1,460,133 - +0.3 1,460,136 + -0.1 1,460,136 + +0.2 1,460,136 + +0.5 1,460,137 - +0.8 1,460,137 - +1.0 1,460,159 + +1.0 1,460,159 + -0.5 1,460,159 + +0.1 1,460,160 - +1.1 1,460,160 - -0.1 1,460,160 - +1.2 1,460,160 - +0.7 1,460,206 - +0.5 1,460,213 + -0.6 1,460,533 + +0.1 1,460,533 + -0.4 1,460,533 + -0.4 1,460,533 + +0.0 1,460,535 + -0.9
Or see this region's nucleotide sequence