Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00638 and SMc00637 are separated by 447 nucleotides SMc00637 and SMc04459 are separated by 323 nucleotides
SMc00638: SMc00638 - HEAT resistant agglutinin 1 protein, at 2,939,231 to 2,940,058
SMc00638
SMc00637: SMc00637 - phosphoglucosamine mutase, at 2,940,506 to 2,941,858
SMc00637
SMc04459: SMc04459 - metalloprotease transmembrane protein, at 2,942,182 to 2,944,119
SMc04459
Position (kb)
2940
2941
2942 Strain fitness (log2 ratio)
-1
0
1 at 2939.596 kb on - strand, within SMc00638 at 2939.613 kb on + strand, within SMc00638 at 2939.632 kb on - strand, within SMc00638 at 2939.632 kb on - strand, within SMc00638 at 2939.632 kb on - strand, within SMc00638 at 2939.716 kb on + strand, within SMc00638 at 2939.717 kb on - strand, within SMc00638 at 2939.772 kb on + strand, within SMc00638 at 2939.773 kb on - strand, within SMc00638 at 2939.773 kb on - strand, within SMc00638 at 2939.871 kb on + strand, within SMc00638 at 2939.922 kb on + strand, within SMc00638 at 2940.005 kb on + strand at 2940.005 kb on + strand at 2940.005 kb on + strand at 2940.006 kb on - strand at 2940.073 kb on - strand at 2940.077 kb on + strand at 2940.077 kb on + strand at 2940.078 kb on - strand at 2940.227 kb on + strand at 2940.228 kb on - strand at 2940.228 kb on - strand at 2940.327 kb on + strand at 2940.327 kb on + strand at 2941.970 kb on - strand at 2941.970 kb on - strand at 2941.990 kb on - strand at 2942.022 kb on - strand at 2942.032 kb on - strand at 2942.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,939,596 - SMc00638 0.44 +0.3 2,939,613 + SMc00638 0.46 -0.2 2,939,632 - SMc00638 0.48 +0.2 2,939,632 - SMc00638 0.48 -1.0 2,939,632 - SMc00638 0.48 +0.2 2,939,716 + SMc00638 0.59 +0.1 2,939,717 - SMc00638 0.59 -0.1 2,939,772 + SMc00638 0.65 +0.2 2,939,773 - SMc00638 0.65 -1.0 2,939,773 - SMc00638 0.65 +0.0 2,939,871 + SMc00638 0.77 +0.7 2,939,922 + SMc00638 0.83 -0.4 2,940,005 + +0.8 2,940,005 + +1.0 2,940,005 + -1.7 2,940,006 - -1.7 2,940,073 - -0.0 2,940,077 + +0.2 2,940,077 + +0.5 2,940,078 - +0.4 2,940,227 + -0.7 2,940,228 - +0.2 2,940,228 - +0.3 2,940,327 + -0.5 2,940,327 + -0.5 2,941,970 - +1.0 2,941,970 - +0.2 2,941,990 - -0.6 2,942,022 - -0.1 2,942,032 - +0.2 2,942,287 - -1.4
Or see this region's nucleotide sequence