Strain Fitness in Sinorhizobium meliloti 1021 around SMc00317

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00316 and SMc00317 overlap by 33 nucleotidesSMc00317 and SMc00248 are separated by 139 nucleotides SMc00316: SMc00316 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 1,815,870 to 1,817,147 SMc00316 SMc00317: SMc00317 - hypothetical protein, at 1,817,115 to 1,818,077 SMc00317 SMc00248: SMc00248 - cytochrome C-type biogenesis protein, at 1,818,217 to 1,818,960 SMc00248 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -1 0 1at 1817.077 kb on + strandat 1817.078 kb on - strandat 1817.078 kb on - strandat 1817.116 kb on + strandat 1817.151 kb on + strandat 1817.152 kb on - strandat 1817.159 kb on - strandat 1817.159 kb on - strandat 1817.320 kb on + strand, within SMc00317at 1817.320 kb on + strand, within SMc00317at 1817.321 kb on - strand, within SMc00317at 1817.321 kb on - strand, within SMc00317at 1817.347 kb on + strand, within SMc00317at 1817.347 kb on + strand, within SMc00317at 1817.347 kb on + strand, within SMc00317at 1817.389 kb on + strand, within SMc00317at 1817.390 kb on - strand, within SMc00317at 1817.390 kb on - strand, within SMc00317at 1817.390 kb on - strand, within SMc00317at 1817.409 kb on - strand, within SMc00317at 1817.483 kb on - strand, within SMc00317at 1817.578 kb on - strand, within SMc00317at 1817.753 kb on - strand, within SMc00317at 1817.753 kb on - strand, within SMc00317at 1817.753 kb on - strand, within SMc00317at 1817.760 kb on - strand, within SMc00317at 1817.768 kb on - strand, within SMc00317at 1817.807 kb on + strand, within SMc00317at 1817.808 kb on - strand, within SMc00317at 1817.808 kb on - strand, within SMc00317at 1817.808 kb on - strand, within SMc00317at 1817.829 kb on + strand, within SMc00317at 1817.830 kb on - strand, within SMc00317at 1817.857 kb on + strand, within SMc00317at 1817.857 kb on + strand, within SMc00317at 1817.858 kb on - strand, within SMc00317at 1817.858 kb on - strand, within SMc00317at 1817.897 kb on + strand, within SMc00317at 1817.898 kb on - strand, within SMc00317at 1817.898 kb on - strand, within SMc00317at 1818.205 kb on - strandat 1819.007 kb on + strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strandat 1819.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,817,077 + -0.1
1,817,078 - +0.3
1,817,078 - -0.7
1,817,116 + -1.2
1,817,151 + -0.4
1,817,152 - +1.4
1,817,159 - -1.2
1,817,159 - -0.2
1,817,320 + SMc00317 0.21 -1.2
1,817,320 + SMc00317 0.21 +0.3
1,817,321 - SMc00317 0.21 +0.0
1,817,321 - SMc00317 0.21 -0.6
1,817,347 + SMc00317 0.24 +0.6
1,817,347 + SMc00317 0.24 -0.4
1,817,347 + SMc00317 0.24 -0.4
1,817,389 + SMc00317 0.28 -0.5
1,817,390 - SMc00317 0.29 +0.8
1,817,390 - SMc00317 0.29 -0.0
1,817,390 - SMc00317 0.29 +0.1
1,817,409 - SMc00317 0.31 +0.6
1,817,483 - SMc00317 0.38 -0.2
1,817,578 - SMc00317 0.48 -0.2
1,817,753 - SMc00317 0.66 +0.0
1,817,753 - SMc00317 0.66 -0.7
1,817,753 - SMc00317 0.66 -0.0
1,817,760 - SMc00317 0.67 -1.0
1,817,768 - SMc00317 0.68 -0.3
1,817,807 + SMc00317 0.72 -0.0
1,817,808 - SMc00317 0.72 -0.9
1,817,808 - SMc00317 0.72 -0.4
1,817,808 - SMc00317 0.72 +0.9
1,817,829 + SMc00317 0.74 -1.4
1,817,830 - SMc00317 0.74 +0.1
1,817,857 + SMc00317 0.77 +0.5
1,817,857 + SMc00317 0.77 -0.5
1,817,858 - SMc00317 0.77 -1.6
1,817,858 - SMc00317 0.77 +0.2
1,817,897 + SMc00317 0.81 +0.0
1,817,898 - SMc00317 0.81 +0.0
1,817,898 - SMc00317 0.81 +0.2
1,818,205 - -0.1
1,819,007 + -0.4
1,819,008 - -0.5
1,819,008 - -0.7
1,819,008 - -0.2
1,819,008 - -0.2
1,819,008 - +0.8

Or see this region's nucleotide sequence