Strain Fitness in Sinorhizobium meliloti 1021 around SMc00232

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00231 and SMc00232 are separated by 243 nucleotidesSMc00232 and SMc00233 are separated by 155 nucleotides SMc00231: SMc00231 - glucosamine--fructose-6-phosphate aminotransferase, at 1,794,802 to 1,796,628 SMc00231 SMc00232: SMc00232 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 1,796,872 to 1,798,242 SMc00232 SMc00233: SMc00233 - hypothetical protein, at 1,798,398 to 1,800,044 SMc00233 Position (kb) 1796 1797 1798 1799Strain fitness (log2 ratio) -2 -1 0 1at 1796.663 kb on - strandat 1796.725 kb on + strandat 1796.726 kb on - strandat 1796.726 kb on - strandat 1796.726 kb on - strandat 1796.809 kb on - strandat 1796.864 kb on + strandat 1796.865 kb on - strandat 1796.918 kb on + strandat 1798.338 kb on - strandat 1798.338 kb on - strandat 1798.351 kb on + strandat 1798.352 kb on - strandat 1798.374 kb on + strandat 1798.391 kb on + strandat 1798.392 kb on - strandat 1798.392 kb on - strandat 1798.396 kb on + strandat 1798.396 kb on + strandat 1798.396 kb on + strandat 1798.397 kb on - strandat 1798.397 kb on - strandat 1798.505 kb on + strandat 1798.505 kb on + strandat 1798.505 kb on + strandat 1798.505 kb on + strandat 1798.506 kb on - strandat 1798.593 kb on - strand, within SMc00233at 1798.717 kb on + strand, within SMc00233at 1798.717 kb on + strand, within SMc00233at 1798.819 kb on + strand, within SMc00233at 1798.820 kb on - strand, within SMc00233at 1798.820 kb on - strand, within SMc00233at 1798.820 kb on - strand, within SMc00233at 1798.820 kb on - strand, within SMc00233at 1799.064 kb on - strand, within SMc00233at 1799.087 kb on - strand, within SMc00233

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,796,663 - +0.7
1,796,725 + -1.8
1,796,726 - +0.6
1,796,726 - -0.0
1,796,726 - +0.6
1,796,809 - -0.2
1,796,864 + +0.2
1,796,865 - +0.4
1,796,918 + +0.3
1,798,338 - -0.1
1,798,338 - -0.0
1,798,351 + +0.7
1,798,352 - +0.0
1,798,374 + +1.4
1,798,391 + +0.7
1,798,392 - -1.1
1,798,392 - +0.2
1,798,396 + -0.3
1,798,396 + +0.2
1,798,396 + -0.1
1,798,397 - -0.7
1,798,397 - -0.1
1,798,505 + +0.1
1,798,505 + -0.1
1,798,505 + -0.4
1,798,505 + -0.4
1,798,506 - +0.1
1,798,593 - SMc00233 0.12 +0.5
1,798,717 + SMc00233 0.19 -0.9
1,798,717 + SMc00233 0.19 -0.6
1,798,819 + SMc00233 0.26 -0.5
1,798,820 - SMc00233 0.26 -0.4
1,798,820 - SMc00233 0.26 -0.3
1,798,820 - SMc00233 0.26 -0.6
1,798,820 - SMc00233 0.26 +1.3
1,799,064 - SMc00233 0.40 +0.9
1,799,087 - SMc00233 0.42 +0.2

Or see this region's nucleotide sequence