Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00229 and SMc00230 are separated by 18 nucleotides SMc00230 and SMc00231 overlap by 4 nucleotides SMc00231 and SMc00232 are separated by 243 nucleotides
SMc00229: SMc00229 - hypothetical protein, at 1,793,597 to 1,794,289
SMc00229
SMc00230: SMc00230 - hypothetical protein, at 1,794,308 to 1,794,805
SMc00230
SMc00231: SMc00231 - glucosamine--fructose-6-phosphate aminotransferase, at 1,794,802 to 1,796,628
SMc00231
SMc00232: SMc00232 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 1,796,872 to 1,798,242
SMc00232
Position (kb)
1794
1795
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1 at 1793.964 kb on + strand, within SMc00229 at 1793.965 kb on - strand, within SMc00229 at 1794.114 kb on + strand, within SMc00229 at 1794.127 kb on + strand, within SMc00229 at 1794.128 kb on - strand, within SMc00229 at 1794.129 kb on + strand, within SMc00229 at 1794.145 kb on - strand, within SMc00229 at 1794.145 kb on - strand, within SMc00229 at 1794.241 kb on - strand at 1794.241 kb on - strand at 1794.241 kb on - strand at 1794.371 kb on + strand, within SMc00230 at 1794.384 kb on + strand, within SMc00230 at 1794.384 kb on + strand, within SMc00230 at 1794.444 kb on + strand, within SMc00230 at 1794.444 kb on + strand, within SMc00230 at 1794.445 kb on - strand at 1794.579 kb on + strand, within SMc00230 at 1794.724 kb on + strand, within SMc00230 at 1794.725 kb on - strand, within SMc00230 at 1794.727 kb on - strand, within SMc00230 at 1794.754 kb on + strand, within SMc00230 at 1796.663 kb on - strand at 1796.725 kb on + strand at 1796.726 kb on - strand at 1796.726 kb on - strand at 1796.726 kb on - strand at 1796.809 kb on - strand at 1796.864 kb on + strand at 1796.865 kb on - strand at 1796.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,793,964 + SMc00229 0.53 +0.2 1,793,965 - SMc00229 0.53 +0.3 1,794,114 + SMc00229 0.75 +0.3 1,794,127 + SMc00229 0.76 -0.6 1,794,128 - SMc00229 0.77 +1.3 1,794,129 + SMc00229 0.77 +0.1 1,794,145 - SMc00229 0.79 +0.8 1,794,145 - SMc00229 0.79 +0.3 1,794,241 - -0.7 1,794,241 - -0.1 1,794,241 - -0.2 1,794,371 + SMc00230 0.13 -0.8 1,794,384 + SMc00230 0.15 -0.0 1,794,384 + SMc00230 0.15 +0.5 1,794,444 + SMc00230 0.27 -0.0 1,794,444 + SMc00230 0.27 -1.3 1,794,445 - +0.6 1,794,579 + SMc00230 0.54 +0.6 1,794,724 + SMc00230 0.84 -0.2 1,794,725 - SMc00230 0.84 +0.7 1,794,727 - SMc00230 0.84 +0.4 1,794,754 + SMc00230 0.90 +0.3 1,796,663 - +0.7 1,796,725 + -1.8 1,796,726 - +0.6 1,796,726 - -0.0 1,796,726 - +0.6 1,796,809 - -0.2 1,796,864 + +0.2 1,796,865 - +0.4 1,796,918 + +0.3
Or see this region's nucleotide sequence