Strain Fitness in Sinorhizobium meliloti 1021 around SMc00231

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00229 and SMc00230 are separated by 18 nucleotidesSMc00230 and SMc00231 overlap by 4 nucleotidesSMc00231 and SMc00232 are separated by 243 nucleotides SMc00229: SMc00229 - hypothetical protein, at 1,793,597 to 1,794,289 SMc00229 SMc00230: SMc00230 - hypothetical protein, at 1,794,308 to 1,794,805 SMc00230 SMc00231: SMc00231 - glucosamine--fructose-6-phosphate aminotransferase, at 1,794,802 to 1,796,628 SMc00231 SMc00232: SMc00232 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 1,796,872 to 1,798,242 SMc00232 Position (kb) 1794 1795 1796 1797Strain fitness (log2 ratio) -2 -1 0 1at 1793.964 kb on + strand, within SMc00229at 1793.965 kb on - strand, within SMc00229at 1794.114 kb on + strand, within SMc00229at 1794.127 kb on + strand, within SMc00229at 1794.128 kb on - strand, within SMc00229at 1794.129 kb on + strand, within SMc00229at 1794.145 kb on - strand, within SMc00229at 1794.145 kb on - strand, within SMc00229at 1794.241 kb on - strandat 1794.241 kb on - strandat 1794.241 kb on - strandat 1794.371 kb on + strand, within SMc00230at 1794.384 kb on + strand, within SMc00230at 1794.384 kb on + strand, within SMc00230at 1794.444 kb on + strand, within SMc00230at 1794.444 kb on + strand, within SMc00230at 1794.445 kb on - strandat 1794.579 kb on + strand, within SMc00230at 1794.724 kb on + strand, within SMc00230at 1794.725 kb on - strand, within SMc00230at 1794.727 kb on - strand, within SMc00230at 1794.754 kb on + strand, within SMc00230at 1796.663 kb on - strandat 1796.725 kb on + strandat 1796.726 kb on - strandat 1796.726 kb on - strandat 1796.726 kb on - strandat 1796.809 kb on - strandat 1796.864 kb on + strandat 1796.865 kb on - strandat 1796.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,793,964 + SMc00229 0.53 +0.2
1,793,965 - SMc00229 0.53 +0.3
1,794,114 + SMc00229 0.75 +0.3
1,794,127 + SMc00229 0.76 -0.6
1,794,128 - SMc00229 0.77 +1.3
1,794,129 + SMc00229 0.77 +0.1
1,794,145 - SMc00229 0.79 +0.8
1,794,145 - SMc00229 0.79 +0.3
1,794,241 - -0.7
1,794,241 - -0.1
1,794,241 - -0.2
1,794,371 + SMc00230 0.13 -0.8
1,794,384 + SMc00230 0.15 -0.0
1,794,384 + SMc00230 0.15 +0.5
1,794,444 + SMc00230 0.27 -0.0
1,794,444 + SMc00230 0.27 -1.3
1,794,445 - +0.6
1,794,579 + SMc00230 0.54 +0.6
1,794,724 + SMc00230 0.84 -0.2
1,794,725 - SMc00230 0.84 +0.7
1,794,727 - SMc00230 0.84 +0.4
1,794,754 + SMc00230 0.90 +0.3
1,796,663 - +0.7
1,796,725 + -1.8
1,796,726 - +0.6
1,796,726 - -0.0
1,796,726 - +0.6
1,796,809 - -0.2
1,796,864 + +0.2
1,796,865 - +0.4
1,796,918 + +0.3

Or see this region's nucleotide sequence