Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2410 and SMa2412 are separated by 73 nucleotides SMa2412 and SMa2414 are separated by 168 nucleotides
SMa2410: SMa2410 - RhbF rhizobactin siderophore biosynthesis protein RhsF, at 1,312,753 to 1,314,558
SMa2410
SMa2412: SMa2412 - RhrA transcriptional activator, at 1,314,632 to 1,315,576
SMa2412
SMa2414: SMa2414 - RhtA rhizobactin receptor precursor, at 1,315,745 to 1,317,985
SMa2414
Position (kb)
1314
1315
1316 Strain fitness (log2 ratio)
-1
0
1 at 1313.663 kb on + strand, within SMa2410 at 1313.788 kb on + strand, within SMa2410 at 1313.788 kb on + strand, within SMa2410 at 1313.788 kb on + strand, within SMa2410 at 1313.789 kb on - strand, within SMa2410 at 1314.152 kb on + strand, within SMa2410 at 1314.261 kb on + strand, within SMa2410 at 1314.261 kb on + strand, within SMa2410 at 1314.261 kb on + strand, within SMa2410 at 1314.261 kb on + strand, within SMa2410 at 1314.262 kb on - strand, within SMa2410 at 1314.262 kb on - strand, within SMa2410 at 1314.262 kb on - strand, within SMa2410 at 1314.262 kb on - strand, within SMa2410 at 1314.263 kb on + strand, within SMa2410 at 1314.263 kb on + strand, within SMa2410 at 1314.263 kb on + strand, within SMa2410 at 1314.263 kb on + strand, within SMa2410 at 1314.263 kb on + strand, within SMa2410 at 1314.264 kb on - strand, within SMa2410 at 1314.264 kb on - strand, within SMa2410 at 1314.264 kb on - strand, within SMa2410 at 1314.264 kb on - strand, within SMa2410 at 1314.278 kb on - strand, within SMa2410 at 1314.336 kb on - strand, within SMa2410 at 1314.359 kb on - strand, within SMa2410 at 1314.422 kb on - strand at 1314.466 kb on + strand at 1314.466 kb on + strand at 1314.467 kb on - strand at 1314.557 kb on - strand at 1314.688 kb on + strand at 1314.688 kb on + strand at 1314.688 kb on + strand at 1314.732 kb on + strand, within SMa2412 at 1314.732 kb on + strand, within SMa2412 at 1314.773 kb on + strand, within SMa2412 at 1314.774 kb on - strand, within SMa2412 at 1314.814 kb on - strand, within SMa2412 at 1314.872 kb on - strand, within SMa2412 at 1314.872 kb on - strand, within SMa2412 at 1314.929 kb on + strand, within SMa2412 at 1314.980 kb on + strand, within SMa2412 at 1314.980 kb on + strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1314.981 kb on - strand, within SMa2412 at 1315.062 kb on + strand, within SMa2412 at 1315.080 kb on + strand, within SMa2412 at 1315.090 kb on - strand, within SMa2412 at 1315.151 kb on + strand, within SMa2412 at 1315.151 kb on + strand, within SMa2412 at 1315.151 kb on + strand, within SMa2412 at 1315.152 kb on - strand, within SMa2412 at 1315.179 kb on + strand, within SMa2412 at 1315.180 kb on - strand, within SMa2412 at 1315.180 kb on - strand, within SMa2412 at 1315.256 kb on + strand, within SMa2412 at 1315.256 kb on + strand, within SMa2412 at 1315.257 kb on - strand, within SMa2412 at 1315.257 kb on - strand, within SMa2412 at 1315.392 kb on + strand, within SMa2412 at 1315.393 kb on - strand, within SMa2412 at 1315.420 kb on - strand, within SMa2412 at 1315.519 kb on + strand at 1315.520 kb on - strand at 1315.674 kb on - strand at 1315.686 kb on - strand at 1315.770 kb on + strand at 1315.926 kb on - strand at 1315.926 kb on - strand at 1316.035 kb on + strand, within SMa2414 at 1316.035 kb on + strand, within SMa2414 at 1316.189 kb on + strand, within SMa2414 at 1316.342 kb on + strand, within SMa2414 at 1316.342 kb on + strand, within SMa2414 at 1316.343 kb on - strand, within SMa2414 at 1316.343 kb on - strand, within SMa2414 at 1316.343 kb on - strand, within SMa2414 at 1316.343 kb on - strand, within SMa2414 at 1316.535 kb on - strand, within SMa2414 at 1316.562 kb on - strand, within SMa2414 at 1316.571 kb on - strand, within SMa2414
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,313,663 + SMa2410 0.50 -0.2 1,313,788 + SMa2410 0.57 +0.8 1,313,788 + SMa2410 0.57 +0.4 1,313,788 + SMa2410 0.57 -1.4 1,313,789 - SMa2410 0.57 -0.0 1,314,152 + SMa2410 0.77 +0.7 1,314,261 + SMa2410 0.83 +1.1 1,314,261 + SMa2410 0.83 -0.1 1,314,261 + SMa2410 0.83 -1.1 1,314,261 + SMa2410 0.83 +0.0 1,314,262 - SMa2410 0.84 -0.1 1,314,262 - SMa2410 0.84 -0.1 1,314,262 - SMa2410 0.84 -0.3 1,314,262 - SMa2410 0.84 +0.3 1,314,263 + SMa2410 0.84 +0.7 1,314,263 + SMa2410 0.84 -1.0 1,314,263 + SMa2410 0.84 +0.1 1,314,263 + SMa2410 0.84 -0.2 1,314,263 + SMa2410 0.84 -0.6 1,314,264 - SMa2410 0.84 +0.3 1,314,264 - SMa2410 0.84 +0.4 1,314,264 - SMa2410 0.84 -0.4 1,314,264 - SMa2410 0.84 +0.2 1,314,278 - SMa2410 0.84 -0.3 1,314,336 - SMa2410 0.88 -0.2 1,314,359 - SMa2410 0.89 +0.1 1,314,422 - -0.9 1,314,466 + +0.4 1,314,466 + +0.1 1,314,467 - -0.7 1,314,557 - -0.5 1,314,688 + +0.9 1,314,688 + -0.3 1,314,688 + -0.1 1,314,732 + SMa2412 0.11 +0.1 1,314,732 + SMa2412 0.11 +0.5 1,314,773 + SMa2412 0.15 +0.4 1,314,774 - SMa2412 0.15 -0.6 1,314,814 - SMa2412 0.19 -1.0 1,314,872 - SMa2412 0.25 -0.8 1,314,872 - SMa2412 0.25 +0.5 1,314,929 + SMa2412 0.31 +0.3 1,314,980 + SMa2412 0.37 +0.2 1,314,980 + SMa2412 0.37 +0.3 1,314,981 - SMa2412 0.37 +0.1 1,314,981 - SMa2412 0.37 +0.3 1,314,981 - SMa2412 0.37 -0.2 1,314,981 - SMa2412 0.37 +0.4 1,314,981 - SMa2412 0.37 -0.6 1,314,981 - SMa2412 0.37 -0.3 1,314,981 - SMa2412 0.37 -0.2 1,314,981 - SMa2412 0.37 +0.5 1,315,062 + SMa2412 0.46 +0.1 1,315,080 + SMa2412 0.47 +0.0 1,315,090 - SMa2412 0.48 -0.5 1,315,151 + SMa2412 0.55 -0.2 1,315,151 + SMa2412 0.55 +0.6 1,315,151 + SMa2412 0.55 +0.7 1,315,152 - SMa2412 0.55 +1.0 1,315,179 + SMa2412 0.58 -0.7 1,315,180 - SMa2412 0.58 -1.2 1,315,180 - SMa2412 0.58 +0.3 1,315,256 + SMa2412 0.66 +0.4 1,315,256 + SMa2412 0.66 -0.3 1,315,257 - SMa2412 0.66 +0.4 1,315,257 - SMa2412 0.66 +0.5 1,315,392 + SMa2412 0.80 +0.6 1,315,393 - SMa2412 0.81 +0.2 1,315,420 - SMa2412 0.83 +0.6 1,315,519 + +1.2 1,315,520 - +0.8 1,315,674 - +0.7 1,315,686 - -0.3 1,315,770 + +1.3 1,315,926 - +0.0 1,315,926 - +0.2 1,316,035 + SMa2414 0.13 +0.0 1,316,035 + SMa2414 0.13 +0.1 1,316,189 + SMa2414 0.20 +0.9 1,316,342 + SMa2414 0.27 +0.8 1,316,342 + SMa2414 0.27 +0.3 1,316,343 - SMa2414 0.27 +0.3 1,316,343 - SMa2414 0.27 +0.2 1,316,343 - SMa2414 0.27 +0.7 1,316,343 - SMa2414 0.27 -1.6 1,316,535 - SMa2414 0.35 +0.0 1,316,562 - SMa2414 0.36 -0.1 1,316,571 - SMa2414 0.37 +0.7
Or see this region's nucleotide sequence