Strain Fitness in Sinorhizobium meliloti 1021 around SMa0854

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0853 and SMa0854 are separated by 493 nucleotidesSMa0854 and SMa0855 are separated by 411 nucleotides SMa0853: SMa0853 - 3-ketoacyl-ACP synthase, at 469,913 to 471,121 SMa0853 SMa0854: SMa0854 - 3-ketoacyl-ACP reductase, at 471,615 to 472,352 SMa0854 SMa0855: SMa0855 - sulfate adenylyltransferase subunit 2, at 472,764 to 473,663 SMa0855 Position (kb) 471 472 473Strain fitness (log2 ratio) -1 0 1 2at 470.619 kb on - strand, within SMa0853at 470.780 kb on + strand, within SMa0853at 470.830 kb on + strand, within SMa0853at 470.830 kb on + strand, within SMa0853at 470.865 kb on - strand, within SMa0853at 470.987 kb on + strand, within SMa0853at 471.341 kb on - strandat 471.447 kb on + strandat 471.481 kb on + strandat 471.567 kb on + strandat 471.589 kb on - strandat 471.609 kb on - strandat 471.667 kb on + strandat 471.667 kb on + strandat 471.668 kb on - strandat 472.089 kb on - strand, within SMa0854at 472.278 kb on + strand, within SMa0854at 472.278 kb on + strand, within SMa0854at 472.278 kb on + strand, within SMa0854at 472.302 kb on + strandat 472.402 kb on + strandat 472.403 kb on - strandat 472.476 kb on - strandat 472.549 kb on + strandat 472.748 kb on + strandat 472.749 kb on - strandat 472.749 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
470,619 - SMa0853 0.58 -0.0
470,780 + SMa0853 0.72 -0.5
470,830 + SMa0853 0.76 -1.2
470,830 + SMa0853 0.76 +0.2
470,865 - SMa0853 0.79 +0.2
470,987 + SMa0853 0.89 -0.5
471,341 - -0.8
471,447 + -0.2
471,481 + -1.6
471,567 + -1.7
471,589 - +0.9
471,609 - -0.1
471,667 + -0.1
471,667 + -0.5
471,668 - +0.3
472,089 - SMa0854 0.64 +0.6
472,278 + SMa0854 0.90 -0.6
472,278 + SMa0854 0.90 +2.4
472,278 + SMa0854 0.90 -0.4
472,302 + -0.7
472,402 + -0.3
472,403 - -1.4
472,476 - -0.4
472,549 + -0.1
472,748 + -0.4
472,749 - +0.4
472,749 - +0.4

Or see this region's nucleotide sequence