Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21655

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21653 and SM_b21654 overlap by 4 nucleotidesSM_b21654 and SM_b21655 are separated by 5 nucleotidesSM_b21655 and SM_b20002 overlap by 4 nucleotides SM_b21653: SM_b21653 - ABC transporter for Lactose, permease component 1 (from data), at 1,369 to 2,265 _b21653 SM_b21654: SM_b21654 - ABC transporter for Lactose, permease component 2 (from data), at 2,262 to 3,080 _b21654 SM_b21655: SM_b21655 - Beta-galactosidase (EC 3.2.1.23) (from data), at 3,086 to 5,353 _b21655 SM_b20002: SM_b20002 - ABC transporter for Lactose, ATPase component (from data), at 5,350 to 6,426 _b20002 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -1 0 1 2 3 4at 2.134 kb on + strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.140 kb on + strand, within SM_b21653at 2.141 kb on - strand, within SM_b21653at 2.195 kb on - strandat 2.195 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.302 kb on - strandat 2.721 kb on + strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.722 kb on - strand, within SM_b21654at 2.800 kb on + strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.801 kb on - strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.814 kb on + strand, within SM_b21654at 2.815 kb on - strand, within SM_b21654at 2.838 kb on + strand, within SM_b21654at 2.839 kb on - strand, within SM_b21654at 2.883 kb on + strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.884 kb on - strand, within SM_b21654at 2.961 kb on + strand, within SM_b21654at 2.962 kb on - strand, within SM_b21654at 2.964 kb on + strand, within SM_b21654at 3.033 kb on + strandat 3.079 kb on - strandat 3.079 kb on - strandat 3.101 kb on - strandat 3.218 kb on + strandat 3.236 kb on + strandat 3.236 kb on + strandat 3.254 kb on + strandat 3.370 kb on + strand, within SM_b21655at 3.380 kb on + strand, within SM_b21655at 3.497 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.506 kb on + strand, within SM_b21655at 3.507 kb on - strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.518 kb on + strand, within SM_b21655at 3.519 kb on - strand, within SM_b21655at 3.565 kb on + strand, within SM_b21655at 3.645 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.797 kb on + strand, within SM_b21655at 3.798 kb on - strand, within SM_b21655at 3.951 kb on - strand, within SM_b21655at 4.043 kb on + strand, within SM_b21655at 4.253 kb on + strand, within SM_b21655at 4.254 kb on - strand, within SM_b21655at 4.460 kb on + strand, within SM_b21655at 4.490 kb on + strand, within SM_b21655at 4.491 kb on - strand, within SM_b21655at 4.505 kb on + strand, within SM_b21655at 4.568 kb on + strand, within SM_b21655at 4.616 kb on + strand, within SM_b21655at 4.617 kb on - strand, within SM_b21655at 4.658 kb on + strand, within SM_b21655at 4.658 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.703 kb on + strand, within SM_b21655at 4.704 kb on - strandat 4.704 kb on - strand, within SM_b21655at 4.704 kb on - strand, within SM_b21655at 4.704 kb on - strand, within SM_b21655at 4.710 kb on - strand, within SM_b21655at 4.842 kb on - strand, within SM_b21655at 5.041 kb on + strand, within SM_b21655at 5.041 kb on + strand, within SM_b21655at 5.042 kb on - strand, within SM_b21655at 5.380 kb on - strandat 5.380 kb on - strandat 5.426 kb on + strandat 5.426 kb on + strandat 5.427 kb on - strandat 5.599 kb on + strand, within SM_b20002at 5.599 kb on + strand, within SM_b20002at 5.599 kb on + strand, within SM_b20002at 5.608 kb on + strand, within SM_b20002at 5.608 kb on + strand, within SM_b20002at 5.616 kb on + strand, within SM_b20002at 5.617 kb on - strand, within SM_b20002at 5.617 kb on - strand, within SM_b20002at 5.635 kb on - strand, within SM_b20002at 5.635 kb on - strand, within SM_b20002at 5.706 kb on + strand, within SM_b20002at 5.863 kb on - strand, within SM_b20002at 5.914 kb on + strand, within SM_b20002at 5.915 kb on - strand, within SM_b20002at 6.013 kb on + strand, within SM_b20002at 6.014 kb on - strand, within SM_b20002at 6.281 kb on - strand, within SM_b20002

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,134 + SM_b21653 0.85 -0.3
2,135 - SM_b21653 0.85 +0.8
2,135 - SM_b21653 0.85 +1.8
2,140 + SM_b21653 0.86 +0.4
2,141 - SM_b21653 0.86 -0.0
2,195 - -0.3
2,195 - +0.8
2,302 - +0.3
2,302 - +2.0
2,302 - -0.4
2,721 + SM_b21654 0.56 -0.2
2,722 - SM_b21654 0.56 -0.1
2,722 - SM_b21654 0.56 +0.2
2,800 + SM_b21654 0.66 +0.3
2,801 - SM_b21654 0.66 +0.2
2,801 - SM_b21654 0.66 +0.3
2,814 + SM_b21654 0.67 +1.8
2,814 + SM_b21654 0.67 +0.0
2,815 - SM_b21654 0.68 +0.0
2,838 + SM_b21654 0.70 -0.6
2,839 - SM_b21654 0.70 -0.1
2,883 + SM_b21654 0.76 -1.0
2,884 - SM_b21654 0.76 -1.2
2,884 - SM_b21654 0.76 +0.8
2,884 - SM_b21654 0.76 +0.5
2,961 + SM_b21654 0.85 +0.3
2,962 - SM_b21654 0.85 +0.5
2,964 + SM_b21654 0.86 +0.0
3,033 + +0.1
3,079 - -1.1
3,079 - +0.4
3,101 - -0.4
3,218 + +0.6
3,236 + +1.4
3,236 + -0.3
3,254 + +0.3
3,370 + SM_b21655 0.13 +0.2
3,380 + SM_b21655 0.13 -0.4
3,497 + SM_b21655 0.18 +0.0
3,506 + SM_b21655 0.19 +0.5
3,506 + SM_b21655 0.19 -0.4
3,506 + SM_b21655 0.19 -0.1
3,507 - SM_b21655 0.19 +0.3
3,518 + SM_b21655 0.19 -0.4
3,518 + SM_b21655 0.19 +0.5
3,519 - SM_b21655 0.19 +0.7
3,565 + SM_b21655 0.21 +0.1
3,645 + SM_b21655 0.25 -0.3
3,797 + SM_b21655 0.31 +0.1
3,797 + SM_b21655 0.31 +0.0
3,798 - SM_b21655 0.31 +0.4
3,951 - SM_b21655 0.38 +0.1
4,043 + SM_b21655 0.42 +1.1
4,253 + SM_b21655 0.51 +0.2
4,254 - SM_b21655 0.51 -1.0
4,460 + SM_b21655 0.61 +0.1
4,490 + SM_b21655 0.62 -0.9
4,491 - SM_b21655 0.62 +0.7
4,505 + SM_b21655 0.63 +0.2
4,568 + SM_b21655 0.65 +0.1
4,616 + SM_b21655 0.67 +0.5
4,617 - SM_b21655 0.68 +0.2
4,658 + SM_b21655 0.69 +1.1
4,658 + SM_b21655 0.69 +0.2
4,703 + SM_b21655 0.71 -0.1
4,703 + SM_b21655 0.71 +0.3
4,703 + SM_b21655 0.71 +0.3
4,703 + SM_b21655 0.71 +1.0
4,703 + SM_b21655 0.71 -0.4
4,703 + SM_b21655 0.71 +0.5
4,704 - +4.7
4,704 - SM_b21655 0.71 +0.0
4,704 - SM_b21655 0.71 -0.1
4,704 - SM_b21655 0.71 +0.5
4,710 - SM_b21655 0.72 -0.3
4,842 - SM_b21655 0.77 +0.1
5,041 + SM_b21655 0.86 -0.2
5,041 + SM_b21655 0.86 -0.4
5,042 - SM_b21655 0.86 +0.7
5,380 - -0.3
5,380 - +0.1
5,426 + -0.6
5,426 + +0.2
5,427 - +0.6
5,599 + SM_b20002 0.23 -0.2
5,599 + SM_b20002 0.23 +0.1
5,599 + SM_b20002 0.23 -0.1
5,608 + SM_b20002 0.24 -0.5
5,608 + SM_b20002 0.24 +0.1
5,616 + SM_b20002 0.25 -1.4
5,617 - SM_b20002 0.25 -0.7
5,617 - SM_b20002 0.25 -0.6
5,635 - SM_b20002 0.26 +1.2
5,635 - SM_b20002 0.26 +0.0
5,706 + SM_b20002 0.33 +0.0
5,863 - SM_b20002 0.48 -0.0
5,914 + SM_b20002 0.52 -0.7
5,915 - SM_b20002 0.52 -0.1
6,013 + SM_b20002 0.62 +2.1
6,014 - SM_b20002 0.62 -0.0
6,281 - SM_b20002 0.86 +0.1

Or see this region's nucleotide sequence