Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21648

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21647 and SM_b21648 are separated by 288 nucleotidesSM_b21648 and SM_b21649 are separated by 195 nucleotides SM_b21647: SM_b21647 - ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data), at 1,676,356 to 1,678,437 _b21647 SM_b21648: SM_b21648 - Alpha-galactosidase (EC 3.2.1.22) (from data), at 1,678,726 to 1,680,198 _b21648 SM_b21649: SM_b21649 - AraC family transcriptional regulator, at 1,680,394 to 1,681,335 _b21649 Position (kb) 1678 1679 1680 1681Strain fitness (log2 ratio) -2 -1 0 1at 1677.753 kb on + strand, within SM_b21647at 1677.755 kb on + strand, within SM_b21647at 1677.756 kb on - strand, within SM_b21647at 1677.756 kb on - strand, within SM_b21647at 1677.855 kb on - strand, within SM_b21647at 1678.082 kb on + strand, within SM_b21647at 1678.133 kb on + strand, within SM_b21647at 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.304 kb on + strandat 1678.305 kb on - strandat 1678.390 kb on + strandat 1678.390 kb on + strandat 1678.390 kb on + strandat 1678.391 kb on - strandat 1678.417 kb on - strandat 1678.417 kb on - strandat 1678.654 kb on + strandat 1679.196 kb on - strand, within SM_b21648at 1679.427 kb on - strand, within SM_b21648at 1679.479 kb on + strand, within SM_b21648at 1679.479 kb on + strand, within SM_b21648at 1679.479 kb on + strand, within SM_b21648at 1679.480 kb on - strand, within SM_b21648at 1679.480 kb on - strand, within SM_b21648at 1679.480 kb on - strand, within SM_b21648at 1679.619 kb on - strand, within SM_b21648at 1679.756 kb on + strand, within SM_b21648at 1679.756 kb on + strand, within SM_b21648at 1679.757 kb on - strand, within SM_b21648at 1679.757 kb on - strand, within SM_b21648at 1679.841 kb on - strand, within SM_b21648at 1679.921 kb on + strand, within SM_b21648at 1679.922 kb on - strand, within SM_b21648at 1679.960 kb on + strand, within SM_b21648at 1679.961 kb on - strand, within SM_b21648at 1680.048 kb on + strand, within SM_b21648at 1680.049 kb on - strand, within SM_b21648at 1680.049 kb on - strand, within SM_b21648at 1680.049 kb on - strand, within SM_b21648at 1680.229 kb on + strandat 1680.319 kb on + strandat 1680.350 kb on + strandat 1680.350 kb on + strandat 1680.350 kb on + strandat 1680.356 kb on + strandat 1680.375 kb on - strandat 1680.495 kb on + strand, within SM_b21649at 1680.496 kb on - strand, within SM_b21649at 1680.496 kb on - strand, within SM_b21649at 1680.527 kb on - strand, within SM_b21649at 1680.608 kb on - strand, within SM_b21649at 1680.676 kb on + strand, within SM_b21649at 1680.676 kb on + strand, within SM_b21649at 1680.783 kb on - strand, within SM_b21649at 1680.877 kb on + strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.878 kb on - strand, within SM_b21649at 1680.898 kb on + strand, within SM_b21649at 1680.898 kb on + strand, within SM_b21649at 1680.899 kb on - strand, within SM_b21649at 1681.193 kb on - strand, within SM_b21649

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,677,753 + SM_b21647 0.67 -1.3
1,677,755 + SM_b21647 0.67 +0.4
1,677,756 - SM_b21647 0.67 +0.0
1,677,756 - SM_b21647 0.67 +0.1
1,677,855 - SM_b21647 0.72 -0.4
1,678,082 + SM_b21647 0.83 -0.5
1,678,133 + SM_b21647 0.85 -0.6
1,678,304 + +0.0
1,678,304 + +0.0
1,678,304 + -0.3
1,678,304 + -0.7
1,678,304 + -0.2
1,678,304 + -0.4
1,678,304 + -0.2
1,678,304 + -0.3
1,678,305 - -0.7
1,678,390 + -0.1
1,678,390 + +0.4
1,678,390 + +0.6
1,678,391 - +0.3
1,678,417 - -0.2
1,678,417 - +0.3
1,678,654 + -0.3
1,679,196 - SM_b21648 0.32 -0.7
1,679,427 - SM_b21648 0.48 -0.2
1,679,479 + SM_b21648 0.51 -0.2
1,679,479 + SM_b21648 0.51 -0.2
1,679,479 + SM_b21648 0.51 -0.4
1,679,480 - SM_b21648 0.51 -0.1
1,679,480 - SM_b21648 0.51 -0.5
1,679,480 - SM_b21648 0.51 +0.5
1,679,619 - SM_b21648 0.61 -0.5
1,679,756 + SM_b21648 0.70 -0.5
1,679,756 + SM_b21648 0.70 -0.8
1,679,757 - SM_b21648 0.70 -1.2
1,679,757 - SM_b21648 0.70 -0.2
1,679,841 - SM_b21648 0.76 +0.3
1,679,921 + SM_b21648 0.81 -0.5
1,679,922 - SM_b21648 0.81 -0.1
1,679,960 + SM_b21648 0.84 +0.0
1,679,961 - SM_b21648 0.84 +0.0
1,680,048 + SM_b21648 0.90 -0.2
1,680,049 - SM_b21648 0.90 -0.7
1,680,049 - SM_b21648 0.90 -0.2
1,680,049 - SM_b21648 0.90 +0.4
1,680,229 + +0.1
1,680,319 + +0.6
1,680,350 + +0.1
1,680,350 + -0.5
1,680,350 + +0.1
1,680,356 + +0.1
1,680,375 - -2.5
1,680,495 + SM_b21649 0.11 +0.1
1,680,496 - SM_b21649 0.11 -0.2
1,680,496 - SM_b21649 0.11 +0.1
1,680,527 - SM_b21649 0.14 +1.2
1,680,608 - SM_b21649 0.23 -0.1
1,680,676 + SM_b21649 0.30 -0.0
1,680,676 + SM_b21649 0.30 -0.3
1,680,783 - SM_b21649 0.41 -0.1
1,680,877 + SM_b21649 0.51 -0.8
1,680,878 - SM_b21649 0.51 -0.2
1,680,878 - SM_b21649 0.51 -0.5
1,680,878 - SM_b21649 0.51 +0.3
1,680,898 + SM_b21649 0.54 -0.3
1,680,898 + SM_b21649 0.54 -2.4
1,680,899 - SM_b21649 0.54 +0.6
1,681,193 - SM_b21649 0.85 +0.6

Or see this region's nucleotide sequence