Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21416

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21415 and SM_b21416 are separated by 242 nucleotidesSM_b21416 and SM_b21417 overlap by 4 nucleotides SM_b21415: SM_b21415 - oxidoreductase, oxygen dependent, FAD-dependent protein, at 1,344,266 to 1,345,705 _b21415 SM_b21416: SM_b21416 - glucose-1-phosphate cytidylyltransferase, at 1,345,948 to 1,346,715 _b21416 SM_b21417: SM_b21417 - CDP-glucose 4,6-dehydratase, at 1,346,712 to 1,347,782 _b21417 Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -1 0 1at 1344.973 kb on + strand, within SM_b21415at 1344.973 kb on + strand, within SM_b21415at 1344.974 kb on - strand, within SM_b21415at 1344.974 kb on - strandat 1344.976 kb on - strand, within SM_b21415at 1344.976 kb on - strand, within SM_b21415at 1345.587 kb on + strandat 1345.588 kb on - strandat 1345.679 kb on + strandat 1345.680 kb on - strandat 1345.680 kb on - strandat 1345.766 kb on + strandat 1345.766 kb on + strandat 1345.798 kb on + strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.801 kb on - strandat 1345.927 kb on - strandat 1345.976 kb on - strandat 1346.019 kb on + strandat 1346.019 kb on + strandat 1346.020 kb on - strandat 1346.068 kb on + strand, within SM_b21416at 1346.077 kb on + strand, within SM_b21416at 1346.078 kb on - strandat 1346.097 kb on + strand, within SM_b21416at 1346.098 kb on - strand, within SM_b21416at 1346.119 kb on + strand, within SM_b21416at 1346.120 kb on - strand, within SM_b21416at 1346.134 kb on + strand, within SM_b21416at 1346.135 kb on - strand, within SM_b21416at 1346.146 kb on + strand, within SM_b21416at 1346.146 kb on + strand, within SM_b21416at 1346.146 kb on + strand, within SM_b21416at 1346.147 kb on - strand, within SM_b21416at 1346.200 kb on + strand, within SM_b21416at 1346.201 kb on - strand, within SM_b21416at 1346.321 kb on - strand, within SM_b21416at 1346.422 kb on + strand, within SM_b21416at 1346.423 kb on - strand, within SM_b21416at 1346.423 kb on - strand, within SM_b21416at 1346.464 kb on - strand, within SM_b21416at 1346.800 kb on + strandat 1346.800 kb on + strandat 1346.800 kb on + strandat 1346.800 kb on + strandat 1346.801 kb on - strandat 1346.801 kb on - strandat 1346.801 kb on - strandat 1346.801 kb on - strandat 1346.801 kb on - strandat 1346.836 kb on - strand, within SM_b21417at 1346.917 kb on + strand, within SM_b21417at 1346.917 kb on + strand, within SM_b21417at 1346.917 kb on + strand, within SM_b21417at 1346.918 kb on - strand, within SM_b21417at 1346.979 kb on - strand, within SM_b21417at 1347.009 kb on + strand, within SM_b21417at 1347.009 kb on + strand, within SM_b21417at 1347.009 kb on + strand, within SM_b21417at 1347.010 kb on - strand, within SM_b21417at 1347.010 kb on - strand, within SM_b21417at 1347.127 kb on - strand, within SM_b21417at 1347.244 kb on - strand, within SM_b21417at 1347.244 kb on - strand, within SM_b21417at 1347.244 kb on - strand, within SM_b21417at 1347.248 kb on + strand, within SM_b21417at 1347.249 kb on - strand, within SM_b21417at 1347.249 kb on - strand, within SM_b21417at 1347.429 kb on + strand, within SM_b21417at 1347.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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1,344,973 + SM_b21415 0.49 +0.4
1,344,973 + SM_b21415 0.49 -0.1
1,344,974 - SM_b21415 0.49 -0.0
1,344,974 - -0.3
1,344,976 - SM_b21415 0.49 -0.4
1,344,976 - SM_b21415 0.49 +0.3
1,345,587 + +1.2
1,345,588 - -1.5
1,345,679 + +0.9
1,345,680 - -0.1
1,345,680 - -0.1
1,345,766 + +0.5
1,345,766 + +0.1
1,345,798 + +0.0
1,345,801 - +1.0
1,345,801 - -0.3
1,345,801 - +0.3
1,345,801 - -0.5
1,345,801 - +0.7
1,345,927 - +0.0
1,345,976 - +0.7
1,346,019 + +0.6
1,346,019 + +0.8
1,346,020 - -0.7
1,346,068 + SM_b21416 0.16 +0.0
1,346,077 + SM_b21416 0.17 -0.7
1,346,078 - +1.3
1,346,097 + SM_b21416 0.19 +1.3
1,346,098 - SM_b21416 0.20 +0.5
1,346,119 + SM_b21416 0.22 +0.5
1,346,120 - SM_b21416 0.22 +0.1
1,346,134 + SM_b21416 0.24 +1.1
1,346,135 - SM_b21416 0.24 -0.7
1,346,146 + SM_b21416 0.26 +1.0
1,346,146 + SM_b21416 0.26 -0.2
1,346,146 + SM_b21416 0.26 +0.2
1,346,147 - SM_b21416 0.26 +0.6
1,346,200 + SM_b21416 0.33 -0.2
1,346,201 - SM_b21416 0.33 +0.2
1,346,321 - SM_b21416 0.49 +0.3
1,346,422 + SM_b21416 0.62 +0.8
1,346,423 - SM_b21416 0.62 -0.9
1,346,423 - SM_b21416 0.62 +0.7
1,346,464 - SM_b21416 0.67 +1.4
1,346,800 + -1.6
1,346,800 + +0.5
1,346,800 + +0.2
1,346,800 + +0.4
1,346,801 - +1.2
1,346,801 - -0.0
1,346,801 - +0.4
1,346,801 - +0.2
1,346,801 - +0.9
1,346,836 - SM_b21417 0.12 +0.8
1,346,917 + SM_b21417 0.19 +0.8
1,346,917 + SM_b21417 0.19 -0.1
1,346,917 + SM_b21417 0.19 +0.1
1,346,918 - SM_b21417 0.19 +0.1
1,346,979 - SM_b21417 0.25 +0.6
1,347,009 + SM_b21417 0.28 +0.1
1,347,009 + SM_b21417 0.28 -0.5
1,347,009 + SM_b21417 0.28 +0.3
1,347,010 - SM_b21417 0.28 +0.2
1,347,010 - SM_b21417 0.28 +0.3
1,347,127 - SM_b21417 0.39 +0.4
1,347,244 - SM_b21417 0.50 +0.9
1,347,244 - SM_b21417 0.50 +0.6
1,347,244 - SM_b21417 0.50 +0.9
1,347,248 + SM_b21417 0.50 -0.3
1,347,249 - SM_b21417 0.50 +0.2
1,347,249 - SM_b21417 0.50 +0.4
1,347,429 + SM_b21417 0.67 -0.4
1,347,705 + +0.0

Or see this region's nucleotide sequence