Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21327

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21326 and SM_b21327 overlap by 4 nucleotidesSM_b21327 and SM_b21328 are separated by 45 nucleotidesSM_b21328 and SM_b21329 are separated by 58 nucleotides SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329 _b21326 SM_b21327: SM_b21327 - dTDP-4-dehydrorhamnose reductase, at 996,326 to 997,228 _b21327 SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092 _b21328 SM_b21329: SM_b21329 - hypothetical protein, at 998,151 to 998,321 _b21329 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2at 995.364 kb on + strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.412 kb on + strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.546 kb on + strand, within SM_b21326at 995.716 kb on - strand, within SM_b21326at 995.744 kb on + strand, within SM_b21326at 995.779 kb on - strand, within SM_b21326at 995.779 kb on - strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.787 kb on + strand, within SM_b21326at 995.788 kb on + strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.788 kb on - strand, within SM_b21326at 995.827 kb on - strand, within SM_b21326at 995.881 kb on + strand, within SM_b21326at 995.882 kb on - strand, within SM_b21326at 995.905 kb on - strand, within SM_b21326at 995.905 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.001 kb on - strand, within SM_b21326at 996.184 kb on + strand, within SM_b21326at 996.286 kb on - strandat 996.388 kb on + strandat 996.412 kb on + strandat 996.510 kb on - strand, within SM_b21327at 996.510 kb on - strand, within SM_b21327at 996.623 kb on - strand, within SM_b21327at 996.635 kb on + strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.665 kb on + strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.783 kb on - strand, within SM_b21327at 996.845 kb on - strand, within SM_b21327at 996.913 kb on + strand, within SM_b21327at 996.914 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 997.227 kb on - strandat 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.644 kb on + strand, within SM_b21328at 997.645 kb on - strand, within SM_b21328at 997.710 kb on + strand, within SM_b21328at 997.710 kb on + strand, within SM_b21328at 997.732 kb on - strand, within SM_b21328at 997.732 kb on - strand, within SM_b21328at 997.755 kb on + strand, within SM_b21328at 997.755 kb on + strand, within SM_b21328at 997.756 kb on - strand, within SM_b21328at 997.767 kb on + strand, within SM_b21328at 997.768 kb on - strand, within SM_b21328at 997.917 kb on + strand, within SM_b21328at 998.132 kb on - strandat 998.152 kb on + strandat 998.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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995,364 + -0.4
995,365 - +0.2
995,365 - -1.0
995,365 - +0.0
995,412 + SM_b21326 0.14 +1.9
995,413 - SM_b21326 0.14 +0.0
995,413 - SM_b21326 0.14 +0.1
995,413 - SM_b21326 0.14 -0.1
995,546 + SM_b21326 0.27 +0.4
995,716 - SM_b21326 0.43 +0.7
995,744 + SM_b21326 0.45 -2.5
995,779 - SM_b21326 0.49 +0.6
995,779 - SM_b21326 0.49 -1.0
995,787 + SM_b21326 0.49 +0.5
995,787 + SM_b21326 0.49 -0.1
995,787 + SM_b21326 0.49 +0.4
995,787 + SM_b21326 0.49 -0.2
995,787 + SM_b21326 0.49 -0.0
995,788 + SM_b21326 0.49 -0.9
995,788 - SM_b21326 0.49 +0.2
995,788 - SM_b21326 0.49 -1.5
995,788 - SM_b21326 0.49 +1.1
995,788 - SM_b21326 0.49 -1.6
995,788 - SM_b21326 0.49 +0.4
995,788 - SM_b21326 0.49 -0.9
995,827 - SM_b21326 0.53 +0.5
995,881 + SM_b21326 0.58 +0.4
995,882 - SM_b21326 0.58 -0.5
995,905 - SM_b21326 0.60 -0.9
995,905 - SM_b21326 0.60 -0.5
996,001 - SM_b21326 0.69 -0.5
996,001 - SM_b21326 0.69 -1.9
996,001 - SM_b21326 0.69 -0.2
996,184 + SM_b21326 0.86 -1.6
996,286 - -0.3
996,388 + +0.1
996,412 + -0.1
996,510 - SM_b21327 0.20 +0.0
996,510 - SM_b21327 0.20 -0.1
996,623 - SM_b21327 0.33 +0.2
996,635 + SM_b21327 0.34 -0.7
996,636 - SM_b21327 0.34 +0.1
996,636 - SM_b21327 0.34 -0.7
996,665 + SM_b21327 0.38 +0.3
996,666 - SM_b21327 0.38 -0.3
996,666 - SM_b21327 0.38 -1.0
996,666 - SM_b21327 0.38 -0.2
996,666 - SM_b21327 0.38 -0.1
996,694 + SM_b21327 0.41 -0.1
996,694 + SM_b21327 0.41 +0.2
996,783 - SM_b21327 0.51 -0.4
996,845 - SM_b21327 0.57 +0.2
996,913 + SM_b21327 0.65 -1.2
996,914 - SM_b21327 0.65 +0.1
996,988 - SM_b21327 0.73 +0.6
996,988 - SM_b21327 0.73 -0.7
997,227 - -2.2
997,416 + SM_b21328 0.17 -0.9
997,416 + SM_b21328 0.17 +0.4
997,416 + SM_b21328 0.17 +0.4
997,416 + SM_b21328 0.17 -1.4
997,416 + SM_b21328 0.17 +0.0
997,417 - SM_b21328 0.17 +0.8
997,417 - SM_b21328 0.17 +0.2
997,417 - SM_b21328 0.17 -0.9
997,644 + SM_b21328 0.45 -0.5
997,645 - SM_b21328 0.45 -0.0
997,710 + SM_b21328 0.53 -0.4
997,710 + SM_b21328 0.53 -0.6
997,732 - SM_b21328 0.56 -0.6
997,732 - SM_b21328 0.56 +0.4
997,755 + SM_b21328 0.59 -0.1
997,755 + SM_b21328 0.59 +0.3
997,756 - SM_b21328 0.59 +0.2
997,767 + SM_b21328 0.60 +0.7
997,768 - SM_b21328 0.60 +0.4
997,917 + SM_b21328 0.79 +0.3
998,132 - +0.6
998,152 + +0.4
998,153 - +0.0

Or see this region's nucleotide sequence