Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21324

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21323 and SM_b21324 are separated by 22 nucleotidesSM_b21324 and SM_b21325 overlap by 8 nucleotidesSM_b21325 and SM_b21326 are separated by 11 nucleotides SM_b21323: SM_b21323 - hypothetical protein, at 992,615 to 993,787 _b21323 SM_b21324: SM_b21324 - glucose-1-phosphate thymidylyltransferase, at 993,810 to 994,691 _b21324 SM_b21325: SM_b21325 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 994,684 to 995,247 _b21325 SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329 _b21326 Position (kb) 993 994 995Strain fitness (log2 ratio) -1 0 1 2at 992.887 kb on + strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.888 kb on - strand, within SM_b21323at 992.889 kb on + strand, within SM_b21323at 992.890 kb on - strand, within SM_b21323at 992.890 kb on - strand, within SM_b21323at 992.963 kb on + strand, within SM_b21323at 992.963 kb on + strand, within SM_b21323at 992.964 kb on - strand, within SM_b21323at 992.964 kb on - strand, within SM_b21323at 992.976 kb on + strand, within SM_b21323at 992.977 kb on - strand, within SM_b21323at 992.977 kb on - strand, within SM_b21323at 993.015 kb on - strand, within SM_b21323at 993.015 kb on - strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.131 kb on + strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.132 kb on - strand, within SM_b21323at 993.141 kb on - strand, within SM_b21323at 993.161 kb on + strand, within SM_b21323at 993.161 kb on + strand, within SM_b21323at 993.162 kb on - strand, within SM_b21323at 993.166 kb on + strand, within SM_b21323at 993.167 kb on - strand, within SM_b21323at 993.242 kb on + strand, within SM_b21323at 993.242 kb on + strand, within SM_b21323at 993.243 kb on - strand, within SM_b21323at 993.243 kb on - strand, within SM_b21323at 993.434 kb on + strand, within SM_b21323at 993.671 kb on + strandat 993.671 kb on + strandat 993.674 kb on + strandat 993.675 kb on - strandat 993.677 kb on + strandat 993.677 kb on + strandat 993.678 kb on - strandat 993.678 kb on - strandat 993.701 kb on + strandat 993.701 kb on + strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.702 kb on - strandat 993.913 kb on - strand, within SM_b21324at 993.913 kb on - strand, within SM_b21324at 993.915 kb on + strand, within SM_b21324at 993.945 kb on - strand, within SM_b21324at 994.038 kb on + strand, within SM_b21324at 994.039 kb on - strand, within SM_b21324at 994.422 kb on + strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.423 kb on - strand, within SM_b21324at 994.467 kb on + strand, within SM_b21324at 994.482 kb on - strand, within SM_b21324at 994.579 kb on + strand, within SM_b21324at 994.580 kb on - strand, within SM_b21324at 994.644 kb on + strandat 994.645 kb on - strandat 994.653 kb on + strandat 994.774 kb on + strand, within SM_b21325at 994.775 kb on - strand, within SM_b21325at 994.837 kb on + strand, within SM_b21325at 994.873 kb on + strand, within SM_b21325at 994.874 kb on - strand, within SM_b21325at 994.874 kb on - strand, within SM_b21325at 995.080 kb on + strand, within SM_b21325at 995.088 kb on - strand, within SM_b21325at 995.098 kb on + strand, within SM_b21325at 995.150 kb on + strand, within SM_b21325at 995.150 kb on + strand, within SM_b21325at 995.151 kb on - strand, within SM_b21325at 995.364 kb on + strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.365 kb on - strandat 995.412 kb on + strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.413 kb on - strand, within SM_b21326at 995.546 kb on + strand, within SM_b21326

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
992,887 + SM_b21323 0.23 -0.7
992,888 - SM_b21323 0.23 +0.5
992,888 - SM_b21323 0.23 +1.0
992,888 - SM_b21323 0.23 +1.2
992,889 + SM_b21323 0.23 -0.2
992,890 - SM_b21323 0.23 -0.7
992,890 - SM_b21323 0.23 +0.4
992,963 + SM_b21323 0.30 +0.3
992,963 + SM_b21323 0.30 -0.0
992,964 - SM_b21323 0.30 -1.2
992,964 - SM_b21323 0.30 -0.7
992,976 + SM_b21323 0.31 +0.9
992,977 - SM_b21323 0.31 +0.1
992,977 - SM_b21323 0.31 +1.3
993,015 - SM_b21323 0.34 -0.3
993,015 - SM_b21323 0.34 +1.7
993,131 + SM_b21323 0.44 +0.9
993,131 + SM_b21323 0.44 +0.0
993,131 + SM_b21323 0.44 +0.1
993,131 + SM_b21323 0.44 -0.1
993,131 + SM_b21323 0.44 +0.1
993,132 - SM_b21323 0.44 +0.5
993,132 - SM_b21323 0.44 +0.1
993,132 - SM_b21323 0.44 +0.0
993,132 - SM_b21323 0.44 +0.1
993,132 - SM_b21323 0.44 -0.6
993,141 - SM_b21323 0.45 +0.1
993,161 + SM_b21323 0.47 -0.3
993,161 + SM_b21323 0.47 +0.0
993,162 - SM_b21323 0.47 +0.1
993,166 + SM_b21323 0.47 +0.7
993,167 - SM_b21323 0.47 +0.2
993,242 + SM_b21323 0.53 -0.2
993,242 + SM_b21323 0.53 +0.6
993,243 - SM_b21323 0.54 -0.3
993,243 - SM_b21323 0.54 +0.1
993,434 + SM_b21323 0.70 +0.2
993,671 + +0.4
993,671 + +0.7
993,674 + -0.4
993,675 - -0.1
993,677 + +0.9
993,677 + +0.1
993,678 - +0.3
993,678 - +0.7
993,701 + +1.0
993,701 + -0.3
993,702 - -0.7
993,702 - -0.3
993,702 - -0.4
993,702 - -0.8
993,913 - SM_b21324 0.12 -1.1
993,913 - SM_b21324 0.12 +1.4
993,915 + SM_b21324 0.12 -0.4
993,945 - SM_b21324 0.15 +0.2
994,038 + SM_b21324 0.26 +1.0
994,039 - SM_b21324 0.26 +0.8
994,422 + SM_b21324 0.69 +0.0
994,423 - SM_b21324 0.70 -0.0
994,423 - SM_b21324 0.70 -0.4
994,467 + SM_b21324 0.74 -0.2
994,482 - SM_b21324 0.76 -0.4
994,579 + SM_b21324 0.87 +0.2
994,580 - SM_b21324 0.87 +0.0
994,644 + +0.4
994,645 - -0.4
994,653 + -0.1
994,774 + SM_b21325 0.16 +0.8
994,775 - SM_b21325 0.16 -0.4
994,837 + SM_b21325 0.27 -0.6
994,873 + SM_b21325 0.34 -0.2
994,874 - SM_b21325 0.34 -0.5
994,874 - SM_b21325 0.34 +0.1
995,080 + SM_b21325 0.70 +1.1
995,088 - SM_b21325 0.72 -0.5
995,098 + SM_b21325 0.73 -0.4
995,150 + SM_b21325 0.83 +0.0
995,150 + SM_b21325 0.83 +1.1
995,151 - SM_b21325 0.83 -1.2
995,364 + -0.4
995,365 - +0.2
995,365 - -1.0
995,365 - +0.0
995,412 + SM_b21326 0.14 +1.9
995,413 - SM_b21326 0.14 +0.0
995,413 - SM_b21326 0.14 +0.1
995,413 - SM_b21326 0.14 -0.1
995,546 + SM_b21326 0.27 +0.4

Or see this region's nucleotide sequence