Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21228

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21226 and SM_b21227 overlap by 4 nucleotidesSM_b21227 and SM_b21228 are separated by 5 nucleotidesSM_b21228 and SM_b21229 are separated by 85 nucleotides SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060 _b21226 SM_b21227: SM_b21227 - carbamoyl phosphate synthase-like protein, at 791,057 to 792,049 _b21227 SM_b21228: SM_b21228 - nucleotide sugar epimerase dehydratase, at 792,055 to 792,990 _b21228 SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239 _b21229 Position (kb) 792 793Strain fitness (log2 ratio) -2 -1 0 1 2at 791.068 kb on + strandat 791.068 kb on + strandat 791.069 kb on - strandat 791.143 kb on - strandat 791.180 kb on + strand, within SM_b21227at 791.198 kb on + strand, within SM_b21227at 791.199 kb on - strand, within SM_b21227at 791.229 kb on - strand, within SM_b21227at 791.342 kb on + strand, within SM_b21227at 791.343 kb on - strandat 791.439 kb on - strand, within SM_b21227at 791.633 kb on + strand, within SM_b21227at 791.633 kb on + strand, within SM_b21227at 791.710 kb on + strand, within SM_b21227at 791.710 kb on + strand, within SM_b21227at 791.711 kb on - strand, within SM_b21227at 791.714 kb on + strand, within SM_b21227at 791.714 kb on + strand, within SM_b21227at 791.715 kb on - strand, within SM_b21227at 791.715 kb on - strand, within SM_b21227at 791.786 kb on + strand, within SM_b21227at 791.787 kb on - strand, within SM_b21227at 791.787 kb on - strand, within SM_b21227at 791.970 kb on + strandat 791.971 kb on - strandat 791.971 kb on - strandat 792.127 kb on + strandat 792.128 kb on - strandat 792.266 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.404 kb on - strand, within SM_b21228at 792.466 kb on + strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.467 kb on - strand, within SM_b21228at 792.470 kb on - strand, within SM_b21228at 792.562 kb on + strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.563 kb on - strand, within SM_b21228at 792.655 kb on + strand, within SM_b21228at 792.655 kb on + strand, within SM_b21228at 792.668 kb on + strand, within SM_b21228at 792.668 kb on + strand, within SM_b21228at 792.673 kb on + strand, within SM_b21228at 792.674 kb on - strand, within SM_b21228at 792.731 kb on + strand, within SM_b21228at 792.901 kb on + strandat 792.988 kb on + strandat 792.988 kb on + strandat 792.988 kb on + strandat 792.989 kb on - strandat 793.039 kb on + strandat 793.181 kb on + strandat 793.209 kb on + strand, within SM_b21229at 793.215 kb on + strand, within SM_b21229at 793.215 kb on + strand, within SM_b21229at 793.245 kb on + strand, within SM_b21229at 793.246 kb on - strand, within SM_b21229at 793.252 kb on + strand, within SM_b21229at 793.253 kb on - strand, within SM_b21229at 793.268 kb on + strand, within SM_b21229at 793.268 kb on + strand, within SM_b21229at 793.300 kb on - strand, within SM_b21229at 793.374 kb on - strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.464 kb on + strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.465 kb on - strand, within SM_b21229at 793.648 kb on - strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.814 kb on + strand, within SM_b21229at 793.851 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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791,068 + +0.2
791,068 + +0.7
791,069 - -0.1
791,143 - -0.4
791,180 + SM_b21227 0.12 +0.3
791,198 + SM_b21227 0.14 -0.1
791,199 - SM_b21227 0.14 +0.0
791,229 - SM_b21227 0.17 +0.0
791,342 + SM_b21227 0.29 -0.0
791,343 - +1.2
791,439 - SM_b21227 0.38 -0.2
791,633 + SM_b21227 0.58 +0.1
791,633 + SM_b21227 0.58 -0.1
791,710 + SM_b21227 0.66 +0.1
791,710 + SM_b21227 0.66 +1.2
791,711 - SM_b21227 0.66 -0.0
791,714 + SM_b21227 0.66 +0.3
791,714 + SM_b21227 0.66 +0.3
791,715 - SM_b21227 0.66 -0.2
791,715 - SM_b21227 0.66 +0.4
791,786 + SM_b21227 0.73 -1.8
791,787 - SM_b21227 0.74 -0.1
791,787 - SM_b21227 0.74 -0.9
791,970 + +0.3
791,971 - -0.5
791,971 - +1.2
792,127 + -0.2
792,128 - +0.6
792,266 - SM_b21228 0.23 +0.6
792,404 - SM_b21228 0.37 -0.6
792,404 - SM_b21228 0.37 +1.2
792,404 - SM_b21228 0.37 -0.1
792,466 + SM_b21228 0.44 +0.2
792,467 - SM_b21228 0.44 +0.1
792,467 - SM_b21228 0.44 +1.1
792,467 - SM_b21228 0.44 -0.4
792,470 - SM_b21228 0.44 -0.7
792,562 + SM_b21228 0.54 -0.4
792,563 - SM_b21228 0.54 +0.4
792,563 - SM_b21228 0.54 -0.5
792,563 - SM_b21228 0.54 +0.5
792,563 - SM_b21228 0.54 +0.1
792,563 - SM_b21228 0.54 -0.2
792,655 + SM_b21228 0.64 +0.6
792,655 + SM_b21228 0.64 +0.2
792,668 + SM_b21228 0.65 +0.1
792,668 + SM_b21228 0.65 -0.6
792,673 + SM_b21228 0.66 +0.2
792,674 - SM_b21228 0.66 +0.4
792,731 + SM_b21228 0.72 -0.5
792,901 + -0.3
792,988 + +0.5
792,988 + +0.0
792,988 + -0.6
792,989 - +0.4
793,039 + +0.1
793,181 + -0.0
793,209 + SM_b21229 0.11 -0.4
793,215 + SM_b21229 0.12 -0.1
793,215 + SM_b21229 0.12 +0.5
793,245 + SM_b21229 0.15 +2.2
793,246 - SM_b21229 0.15 -0.6
793,252 + SM_b21229 0.15 -0.4
793,253 - SM_b21229 0.15 -1.0
793,268 + SM_b21229 0.16 -0.6
793,268 + SM_b21229 0.16 +0.0
793,300 - SM_b21229 0.19 -0.9
793,374 - SM_b21229 0.26 -0.9
793,464 + SM_b21229 0.33 +0.1
793,464 + SM_b21229 0.33 -0.3
793,464 + SM_b21229 0.33 -0.5
793,465 - SM_b21229 0.33 +0.8
793,465 - SM_b21229 0.33 +0.1
793,465 - SM_b21229 0.33 +0.1
793,648 - SM_b21229 0.49 -0.7
793,749 + SM_b21229 0.58 +0.6
793,749 + SM_b21229 0.58 -0.1
793,750 - SM_b21229 0.58 -0.2
793,750 - SM_b21229 0.58 +1.4
793,750 - SM_b21229 0.58 +0.9
793,750 - SM_b21229 0.58 +0.4
793,751 + SM_b21229 0.58 +0.4
793,751 + SM_b21229 0.58 -0.2
793,752 - SM_b21229 0.58 +0.1
793,752 - SM_b21229 0.58 +0.2
793,814 + SM_b21229 0.63 +0.2
793,851 + SM_b21229 0.67 -0.2
793,882 + SM_b21229 0.69 +1.2
793,882 + SM_b21229 0.69 -0.9
793,883 - SM_b21229 0.69 -0.1
793,883 - SM_b21229 0.69 -0.1
793,884 + SM_b21229 0.69 -0.5
793,884 + SM_b21229 0.69 +0.4
793,884 + SM_b21229 0.69 -0.3
793,884 + SM_b21229 0.69 +0.3
793,885 - SM_b21229 0.70 +0.4
793,885 - SM_b21229 0.70 -0.1
793,988 + SM_b21229 0.78 -1.4
793,988 + SM_b21229 0.78 -0.4
793,988 + SM_b21229 0.78 +0.5

Or see this region's nucleotide sequence