Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21148 and SM_b21149 are separated by 12 nucleotides SM_b21149 and SM_b21150 overlap by 4 nucleotides SM_b21150 and SM_b21151 are separated by 29 nucleotides
SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774
_b21148
SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671
_b21149
SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525
_b21150
SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784
_b21151
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 893.848 kb on - strand at 893.882 kb on + strand, within SM_b21149 at 893.949 kb on + strand, within SM_b21149 at 894.159 kb on + strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.160 kb on - strand, within SM_b21149 at 894.162 kb on - strand, within SM_b21149 at 894.306 kb on + strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.307 kb on - strand, within SM_b21149 at 894.345 kb on + strand, within SM_b21149 at 894.346 kb on - strand, within SM_b21149 at 894.381 kb on + strand, within SM_b21149 at 894.382 kb on - strand, within SM_b21149 at 894.538 kb on - strand, within SM_b21149 at 894.538 kb on - strand, within SM_b21149 at 894.599 kb on + strand at 894.627 kb on + strand at 894.627 kb on + strand at 894.704 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.722 kb on + strand at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.783 kb on + strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.858 kb on - strand, within SM_b21150 at 894.898 kb on + strand, within SM_b21150 at 894.899 kb on - strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.968 kb on + strand, within SM_b21150 at 894.969 kb on - strand, within SM_b21150 at 895.104 kb on - strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.169 kb on + strand, within SM_b21150 at 895.170 kb on - strand, within SM_b21150 at 895.232 kb on + strand, within SM_b21150 at 895.239 kb on + strand, within SM_b21150 at 895.240 kb on - strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.281 kb on + strand, within SM_b21150 at 895.310 kb on + strand at 895.311 kb on - strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.358 kb on + strand, within SM_b21150 at 895.359 kb on - strand, within SM_b21150 at 895.389 kb on - strand, within SM_b21150 at 895.485 kb on - strand at 895.524 kb on - strand at 895.534 kb on + strand at 895.560 kb on + strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.561 kb on - strand at 895.576 kb on - strand at 895.660 kb on + strand at 895.684 kb on - strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.696 kb on + strand, within SM_b21151 at 895.820 kb on - strand, within SM_b21151 at 895.906 kb on + strand, within SM_b21151 at 895.907 kb on - strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.960 kb on - strand, within SM_b21151 at 895.985 kb on - strand, within SM_b21151 at 896.158 kb on + strand, within SM_b21151 at 896.160 kb on + strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.388 kb on - strand, within SM_b21151
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 893,848 - -0.4 893,882 + SM_b21149 0.11 +0.8 893,949 + SM_b21149 0.18 +0.3 894,159 + SM_b21149 0.42 +0.2 894,160 - SM_b21149 0.42 +0.5 894,160 - SM_b21149 0.42 -1.0 894,160 - SM_b21149 0.42 +0.4 894,162 - SM_b21149 0.42 -0.5 894,306 + SM_b21149 0.59 -0.2 894,307 - SM_b21149 0.59 +0.4 894,307 - SM_b21149 0.59 -0.0 894,307 - SM_b21149 0.59 +0.3 894,345 + SM_b21149 0.63 +0.4 894,346 - SM_b21149 0.63 +1.9 894,381 + SM_b21149 0.67 -0.3 894,382 - SM_b21149 0.67 +0.2 894,538 - SM_b21149 0.85 +1.1 894,538 - SM_b21149 0.85 -0.7 894,599 + +0.9 894,627 + +0.0 894,627 + -2.8 894,704 + -0.5 894,722 + -0.1 894,722 + +0.5 894,722 + -0.1 894,722 + +0.1 894,722 + +0.6 894,783 + SM_b21150 0.13 +1.6 894,783 + SM_b21150 0.13 +0.2 894,783 + SM_b21150 0.13 +0.9 894,858 - SM_b21150 0.22 +0.2 894,858 - SM_b21150 0.22 +0.7 894,898 + SM_b21150 0.27 +0.4 894,899 - SM_b21150 0.27 +0.0 894,968 + SM_b21150 0.35 +0.1 894,968 + SM_b21150 0.35 +0.3 894,969 - SM_b21150 0.35 -0.4 895,104 - SM_b21150 0.51 -0.1 895,169 + SM_b21150 0.58 +1.5 895,169 + SM_b21150 0.58 +0.1 895,170 - SM_b21150 0.59 -1.1 895,232 + SM_b21150 0.66 +2.2 895,239 + SM_b21150 0.67 +0.2 895,240 - SM_b21150 0.67 +0.0 895,281 + SM_b21150 0.71 -0.3 895,281 + SM_b21150 0.71 +0.2 895,310 + -1.0 895,311 - SM_b21150 0.75 +1.7 895,358 + SM_b21150 0.80 -0.3 895,358 + SM_b21150 0.80 -0.6 895,359 - SM_b21150 0.81 -0.7 895,389 - SM_b21150 0.84 -0.2 895,485 - +0.2 895,524 - -0.6 895,534 + -1.2 895,560 + -0.6 895,561 - -0.3 895,561 - +0.1 895,561 - -0.3 895,576 - +0.8 895,660 + +0.4 895,684 - SM_b21151 0.10 +0.1 895,696 + SM_b21151 0.11 -0.6 895,696 + SM_b21151 0.11 +0.9 895,696 + SM_b21151 0.11 +0.2 895,696 + SM_b21151 0.11 +0.1 895,820 - SM_b21151 0.22 +1.7 895,906 + SM_b21151 0.29 +0.2 895,907 - SM_b21151 0.29 -2.0 895,914 + SM_b21151 0.29 +0.3 895,914 + SM_b21151 0.29 +0.4 895,960 - SM_b21151 0.33 +1.0 895,985 - SM_b21151 0.35 -0.6 896,158 + SM_b21151 0.49 +0.0 896,160 + SM_b21151 0.49 -0.4 896,161 - SM_b21151 0.49 -0.2 896,161 - SM_b21151 0.49 -0.2 896,194 - SM_b21151 0.52 -0.3 896,194 - SM_b21151 0.52 +0.2 896,194 - SM_b21151 0.52 +0.3 896,194 - SM_b21151 0.52 +0.2 896,236 + SM_b21151 0.55 +0.6 896,236 + SM_b21151 0.55 +0.3 896,236 + SM_b21151 0.55 +1.0 896,278 + SM_b21151 0.59 -0.2 896,278 + SM_b21151 0.59 +0.0 896,388 - SM_b21151 0.68 +0.5
Or see this region's nucleotide sequence