Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20459

Experiment: Cobalt chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20458 and SM_b20459 overlap by 1 nucleotidesSM_b20459 and SM_b20460 overlap by 4 nucleotides SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458 _b20458 SM_b20459: SM_b20459 - UDP-glucose 4-epimerase, at 471,458 to 472,444 _b20459 SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306 _b20460 Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1at 470.588 kb on + strand, within SM_b20458at 470.589 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.701 kb on - strand, within SM_b20458at 470.703 kb on - strand, within SM_b20458at 470.733 kb on + strand, within SM_b20458at 470.734 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.884 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 470.923 kb on - strand, within SM_b20458at 471.015 kb on + strand, within SM_b20458at 471.089 kb on + strand, within SM_b20458at 471.089 kb on + strand, within SM_b20458at 471.099 kb on + strand, within SM_b20458at 471.099 kb on + strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.100 kb on - strand, within SM_b20458at 471.405 kb on + strandat 471.473 kb on - strandat 471.473 kb on - strandat 471.498 kb on - strandat 471.554 kb on + strandat 471.555 kb on - strandat 471.616 kb on + strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.617 kb on - strand, within SM_b20459at 471.732 kb on - strand, within SM_b20459at 471.824 kb on + strandat 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.824 kb on + strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.825 kb on - strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.884 kb on + strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.890 kb on - strand, within SM_b20459at 471.926 kb on + strand, within SM_b20459at 471.927 kb on - strand, within SM_b20459at 471.965 kb on + strand, within SM_b20459at 472.123 kb on - strand, within SM_b20459at 472.130 kb on + strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.131 kb on - strand, within SM_b20459at 472.132 kb on + strand, within SM_b20459at 472.133 kb on - strand, within SM_b20459at 472.133 kb on - strandat 472.133 kb on - strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.239 kb on + strand, within SM_b20459at 472.270 kb on + strand, within SM_b20459at 472.627 kb on - strandat 472.627 kb on - strandat 472.627 kb on - strandat 472.672 kb on + strand, within SM_b20460at 472.673 kb on - strand, within SM_b20460at 472.871 kb on + strand, within SM_b20460at 472.871 kb on + strand, within SM_b20460at 472.872 kb on - strand, within SM_b20460at 472.872 kb on - strand, within SM_b20460at 472.927 kb on + strand, within SM_b20460at 472.927 kb on + strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.928 kb on - strand, within SM_b20460at 472.987 kb on + strand, within SM_b20460at 472.987 kb on + strand, within SM_b20460at 472.988 kb on - strand, within SM_b20460at 472.997 kb on - strand, within SM_b20460at 473.002 kb on + strand, within SM_b20460at 473.104 kb on + strand, within SM_b20460at 473.104 kb on + strand, within SM_b20460at 473.105 kb on - strand, within SM_b20460at 473.105 kb on - strand, within SM_b20460at 473.171 kb on - strand, within SM_b20460at 473.210 kb on - strand, within SM_b20460at 473.236 kb on - strand, within SM_b20460at 473.249 kb on - strand, within SM_b20460at 473.437 kb on - strand, within SM_b20460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
remove
470,588 + SM_b20458 0.17 -0.3
470,589 - SM_b20458 0.17 -0.2
470,701 - SM_b20458 0.28 +1.7
470,701 - SM_b20458 0.28 -2.3
470,701 - SM_b20458 0.28 -0.4
470,703 - SM_b20458 0.28 -0.3
470,733 + SM_b20458 0.31 -1.1
470,734 - SM_b20458 0.31 -0.7
470,884 - SM_b20458 0.45 -0.1
470,884 - SM_b20458 0.45 -0.3
470,884 - SM_b20458 0.45 -0.6
470,884 - SM_b20458 0.45 -0.5
470,923 - SM_b20458 0.49 -0.5
470,923 - SM_b20458 0.49 -0.2
470,923 - SM_b20458 0.49 -0.7
471,015 + SM_b20458 0.58 +1.0
471,089 + SM_b20458 0.65 -0.1
471,089 + SM_b20458 0.65 +0.1
471,099 + SM_b20458 0.66 -0.9
471,099 + SM_b20458 0.66 -0.2
471,100 - SM_b20458 0.66 +1.1
471,100 - SM_b20458 0.66 +0.5
471,100 - SM_b20458 0.66 -1.0
471,405 + -0.1
471,473 - +1.1
471,473 - -0.1
471,498 - -0.0
471,554 + -0.1
471,555 - -0.1
471,616 + SM_b20459 0.16 -0.3
471,617 - SM_b20459 0.16 -0.1
471,617 - SM_b20459 0.16 +0.3
471,732 - SM_b20459 0.28 -2.5
471,824 + +1.3
471,824 + SM_b20459 0.37 +0.8
471,824 + SM_b20459 0.37 -0.4
471,824 + SM_b20459 0.37 -0.4
471,824 + SM_b20459 0.37 -0.7
471,824 + SM_b20459 0.37 -0.1
471,824 + SM_b20459 0.37 -0.4
471,825 - SM_b20459 0.37 +1.2
471,825 - SM_b20459 0.37 -0.1
471,825 - SM_b20459 0.37 -0.5
471,884 + SM_b20459 0.43 -0.1
471,884 + SM_b20459 0.43 -1.5
471,890 - SM_b20459 0.44 -0.4
471,890 - SM_b20459 0.44 -0.1
471,890 - SM_b20459 0.44 +1.0
471,890 - SM_b20459 0.44 -0.8
471,926 + SM_b20459 0.47 +0.3
471,927 - SM_b20459 0.48 +0.4
471,965 + SM_b20459 0.51 -0.4
472,123 - SM_b20459 0.67 -0.1
472,130 + SM_b20459 0.68 +0.2
472,131 - SM_b20459 0.68 +0.5
472,131 - SM_b20459 0.68 -0.1
472,132 + SM_b20459 0.68 -0.1
472,133 - SM_b20459 0.68 -0.0
472,133 - +0.8
472,133 - SM_b20459 0.68 +0.7
472,239 + SM_b20459 0.79 -0.2
472,239 + SM_b20459 0.79 -0.4
472,270 + SM_b20459 0.82 +0.5
472,627 - -0.4
472,627 - -1.0
472,627 - -0.5
472,672 + SM_b20460 0.12 -0.5
472,673 - SM_b20460 0.12 -0.4
472,871 + SM_b20460 0.23 +0.3
472,871 + SM_b20460 0.23 +0.2
472,872 - SM_b20460 0.23 -0.1
472,872 - SM_b20460 0.23 +0.4
472,927 + SM_b20460 0.26 -0.2
472,927 + SM_b20460 0.26 +0.5
472,928 - SM_b20460 0.26 +0.4
472,928 - SM_b20460 0.26 +1.5
472,928 - SM_b20460 0.26 -1.1
472,928 - SM_b20460 0.26 -1.1
472,987 + SM_b20460 0.29 +0.6
472,987 + SM_b20460 0.29 -0.1
472,988 - SM_b20460 0.29 +0.0
472,997 - SM_b20460 0.30 -0.2
473,002 + SM_b20460 0.30 +0.1
473,104 + SM_b20460 0.36 -1.3
473,104 + SM_b20460 0.36 +0.0
473,105 - SM_b20460 0.36 -0.2
473,105 - SM_b20460 0.36 +0.0
473,171 - SM_b20460 0.39 -0.5
473,210 - SM_b20460 0.41 +0.1
473,236 - SM_b20460 0.43 -0.8
473,249 - SM_b20460 0.43 -0.2
473,437 - SM_b20460 0.53 +0.0

Or see this region's nucleotide sequence