Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31915

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31910 and RR42_RS31915 are separated by 14 nucleotidesRR42_RS31915 and RR42_RS31920 are separated by 50 nucleotides RR42_RS31910: RR42_RS31910 - acyl-CoA dehydrogenase, at 2,536,283 to 2,537,527 _RS31910 RR42_RS31915: RR42_RS31915 - short-chain dehydrogenase, at 2,537,542 to 2,538,417 _RS31915 RR42_RS31920: RR42_RS31920 - acetyl-CoA acetyltransferase, at 2,538,468 to 2,539,619 _RS31920 Position (kb) 2537 2538 2539Strain fitness (log2 ratio) -1 0 1at 2536.712 kb on - strand, within RR42_RS31910at 2537.553 kb on - strandat 2537.553 kb on - strandat 2537.771 kb on + strand, within RR42_RS31915at 2537.771 kb on + strand, within RR42_RS31915at 2537.772 kb on - strand, within RR42_RS31915at 2537.774 kb on + strand, within RR42_RS31915at 2537.936 kb on + strand, within RR42_RS31915at 2537.936 kb on + strand, within RR42_RS31915

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,536,712 - RR42_RS31910 0.34 +0.7
2,537,553 - +0.4
2,537,553 - -1.0
2,537,771 + RR42_RS31915 0.26 -0.5
2,537,771 + RR42_RS31915 0.26 +0.8
2,537,772 - RR42_RS31915 0.26 +1.4
2,537,774 + RR42_RS31915 0.26 +1.0
2,537,936 + RR42_RS31915 0.45 +1.1
2,537,936 + RR42_RS31915 0.45 +0.8

Or see this region's nucleotide sequence