Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS28690 and RR42_RS28695 are separated by 202 nucleotides RR42_RS28695 and RR42_RS28700 are separated by 6 nucleotides RR42_RS28700 and RR42_RS28705 are separated by 124 nucleotides RR42_RS28705 and RR42_RS28710 are separated by 127 nucleotides
RR42_RS28690: RR42_RS28690 - ABC transporter substrate-binding protein, at 1,790,367 to 1,791,353
_RS28690
RR42_RS28695: RR42_RS28695 - hypothetical protein, at 1,791,556 to 1,791,747
_RS28695
RR42_RS28700: RR42_RS28700 - mechanosensitive ion channel protein MscS, at 1,791,754 to 1,792,116
_RS28700
RR42_RS28705: RR42_RS28705 - hypothetical protein, at 1,792,241 to 1,792,510
_RS28705
RR42_RS28710: RR42_RS28710 - ADP/ATP translocating protein, at 1,792,638 to 1,794,005
_RS28710
Position (kb) 1792
1793 Strain fitness (log2 ratio) -1
0
1
2 at 1791.262 kb on + strand at 1791.263 kb on - strand at 1791.446 kb on - strand at 1791.494 kb on + strand at 1791.498 kb on + strand at 1791.592 kb on - strand, within RR42_RS28695 at 1791.601 kb on + strand, within RR42_RS28695 at 1791.745 kb on + strand at 1791.758 kb on + strand at 1791.768 kb on - strand at 1791.777 kb on - strand at 1791.777 kb on - strand at 1791.800 kb on + strand, within RR42_RS28700 at 1791.800 kb on + strand, within RR42_RS28700 at 1791.801 kb on - strand, within RR42_RS28700 at 1791.801 kb on - strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.803 kb on + strand, within RR42_RS28700 at 1791.804 kb on - strand, within RR42_RS28700 at 1791.806 kb on + strand, within RR42_RS28700 at 1791.836 kb on + strand, within RR42_RS28700 at 1791.849 kb on - strand, within RR42_RS28700 at 1791.849 kb on - strand, within RR42_RS28700 at 1791.863 kb on + strand, within RR42_RS28700 at 1791.881 kb on + strand, within RR42_RS28700 at 1791.881 kb on + strand, within RR42_RS28700 at 1792.212 kb on + strand at 1792.345 kb on + strand, within RR42_RS28705 at 1792.345 kb on + strand, within RR42_RS28705 at 1792.345 kb on + strand, within RR42_RS28705 at 1792.551 kb on + strand at 1792.551 kb on + strand at 1792.563 kb on + strand at 1792.580 kb on - strand at 1792.626 kb on + strand at 1792.626 kb on + strand at 1792.856 kb on - strand, within RR42_RS28710 at 1792.888 kb on + strand, within RR42_RS28710 at 1792.888 kb on + strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.889 kb on - strand, within RR42_RS28710 at 1792.949 kb on - strand, within RR42_RS28710 at 1792.949 kb on - strand, within RR42_RS28710 at 1793.212 kb on + strand, within RR42_RS28710 at 1793.401 kb on + strand, within RR42_RS28710 at 1793.401 kb on + strand, within RR42_RS28710
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,791,262 + -0.6 1,791,263 - +0.6 1,791,446 - -0.4 1,791,494 + +0.1 1,791,498 + +0.2 1,791,592 - RR42_RS28695 0.19 -0.3 1,791,601 + RR42_RS28695 0.23 +0.7 1,791,745 + -0.1 1,791,758 + +0.9 1,791,768 - +0.3 1,791,777 - -0.1 1,791,777 - -0.8 1,791,800 + RR42_RS28700 0.13 -0.6 1,791,800 + RR42_RS28700 0.13 -0.3 1,791,801 - RR42_RS28700 0.13 -1.5 1,791,801 - RR42_RS28700 0.13 +0.0 1,791,803 + RR42_RS28700 0.13 -0.6 1,791,803 + RR42_RS28700 0.13 -0.3 1,791,803 + RR42_RS28700 0.13 -0.4 1,791,804 - RR42_RS28700 0.14 -0.2 1,791,806 + RR42_RS28700 0.14 -0.3 1,791,836 + RR42_RS28700 0.23 +0.0 1,791,849 - RR42_RS28700 0.26 +0.6 1,791,849 - RR42_RS28700 0.26 +0.0 1,791,863 + RR42_RS28700 0.30 -0.0 1,791,881 + RR42_RS28700 0.35 +0.1 1,791,881 + RR42_RS28700 0.35 +1.9 1,792,212 + -0.0 1,792,345 + RR42_RS28705 0.39 +0.6 1,792,345 + RR42_RS28705 0.39 +0.6 1,792,345 + RR42_RS28705 0.39 +1.2 1,792,551 + -0.4 1,792,551 + -0.0 1,792,563 + -0.1 1,792,580 - -0.3 1,792,626 + -1.1 1,792,626 + +0.3 1,792,856 - RR42_RS28710 0.16 +0.1 1,792,888 + RR42_RS28710 0.18 +0.9 1,792,888 + RR42_RS28710 0.18 +0.3 1,792,889 - RR42_RS28710 0.18 +0.1 1,792,889 - RR42_RS28710 0.18 -0.6 1,792,889 - RR42_RS28710 0.18 -0.2 1,792,889 - RR42_RS28710 0.18 -1.2 1,792,889 - RR42_RS28710 0.18 +0.5 1,792,949 - RR42_RS28710 0.23 +0.2 1,792,949 - RR42_RS28710 0.23 +0.6 1,793,212 + RR42_RS28710 0.42 +0.2 1,793,401 + RR42_RS28710 0.56 +0.1 1,793,401 + RR42_RS28710 0.56 -1.6
Or see this region's nucleotide sequence