Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26490

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26485 and RR42_RS26490 overlap by 16 nucleotidesRR42_RS26490 and RR42_RS26495 are separated by 251 nucleotides RR42_RS26485: RR42_RS26485 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 1,297,491 to 1,298,537 _RS26485 RR42_RS26490: RR42_RS26490 - N-carbamoylsarcosine amidase, at 1,298,522 to 1,299,163 _RS26490 RR42_RS26495: RR42_RS26495 - carbon monoxide dehydrogenase, at 1,299,415 to 1,301,823 _RS26495 Position (kb) 1298 1299 1300Strain fitness (log2 ratio) -2 -1 0 1at 1297.581 kb on - strandat 1297.581 kb on - strandat 1297.581 kb on - strandat 1297.714 kb on - strand, within RR42_RS26485at 1297.714 kb on - strand, within RR42_RS26485at 1298.022 kb on + strand, within RR42_RS26485at 1298.242 kb on - strand, within RR42_RS26485at 1298.334 kb on + strand, within RR42_RS26485at 1298.374 kb on - strand, within RR42_RS26485at 1299.256 kb on + strandat 1299.415 kb on - strandat 1299.639 kb on + strandat 1299.640 kb on - strandat 1299.686 kb on - strand, within RR42_RS26495at 1299.831 kb on + strand, within RR42_RS26495at 1300.060 kb on + strand, within RR42_RS26495

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,297,581 - -0.5
1,297,581 - -1.1
1,297,581 - -0.1
1,297,714 - RR42_RS26485 0.21 +0.0
1,297,714 - RR42_RS26485 0.21 +1.7
1,298,022 + RR42_RS26485 0.51 -2.4
1,298,242 - RR42_RS26485 0.72 -1.6
1,298,334 + RR42_RS26485 0.81 +0.7
1,298,374 - RR42_RS26485 0.84 +0.5
1,299,256 + -1.7
1,299,415 - +1.1
1,299,639 + -0.2
1,299,640 - -0.5
1,299,686 - RR42_RS26495 0.11 +0.2
1,299,831 + RR42_RS26495 0.17 -0.5
1,300,060 + RR42_RS26495 0.27 -0.3

Or see this region's nucleotide sequence