Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24660 and RR42_RS24665 overlap by 4 nucleotides RR42_RS24665 and RR42_RS24670 are separated by 69 nucleotides RR42_RS24670 and RR42_RS24675 are separated by 323 nucleotides
RR42_RS24660: RR42_RS24660 - acriflavin resistance protein, at 868,777 to 871,884
_RS24660
RR42_RS24665: RR42_RS24665 - hypothetical protein, at 871,881 to 872,990
_RS24665
RR42_RS24670: RR42_RS24670 - hypothetical protein, at 873,060 to 873,617
_RS24670
RR42_RS24675: RR42_RS24675 - hypothetical protein, at 873,941 to 875,110
_RS24675
Position (kb) 871
872
873 Strain fitness (log2 ratio) -2
-1
0
1 at 871.049 kb on + strand, within RR42_RS24660 at 871.049 kb on + strand, within RR42_RS24660 at 871.050 kb on - strand, within RR42_RS24660 at 871.091 kb on - strand, within RR42_RS24660 at 871.252 kb on + strand, within RR42_RS24660 at 871.253 kb on - strand, within RR42_RS24660 at 871.331 kb on + strand, within RR42_RS24660 at 871.334 kb on + strand, within RR42_RS24660 at 871.375 kb on + strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.376 kb on - strand, within RR42_RS24660 at 871.391 kb on + strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.392 kb on - strand, within RR42_RS24660 at 871.697 kb on - strand at 871.795 kb on + strand at 871.854 kb on + strand at 871.904 kb on + strand at 871.905 kb on - strand at 872.088 kb on + strand, within RR42_RS24665 at 872.099 kb on + strand, within RR42_RS24665 at 872.990 kb on + strand at 872.990 kb on + strand at 872.991 kb on - strand at 873.061 kb on + strand at 873.223 kb on + strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.224 kb on - strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.290 kb on + strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.291 kb on - strand, within RR42_RS24670 at 873.323 kb on + strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.324 kb on - strand, within RR42_RS24670 at 873.475 kb on + strand, within RR42_RS24670 at 873.555 kb on + strand, within RR42_RS24670 at 873.556 kb on - strand, within RR42_RS24670 at 873.605 kb on + strand at 873.606 kb on - strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.692 kb on + strand at 873.701 kb on + strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.702 kb on - strand at 873.851 kb on - strand at 873.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 871,049 + RR42_RS24660 0.73 -0.2 871,049 + RR42_RS24660 0.73 -0.5 871,050 - RR42_RS24660 0.73 -1.0 871,091 - RR42_RS24660 0.74 +0.3 871,252 + RR42_RS24660 0.80 -0.3 871,253 - RR42_RS24660 0.80 +0.4 871,331 + RR42_RS24660 0.82 +0.4 871,334 + RR42_RS24660 0.82 -0.5 871,375 + RR42_RS24660 0.84 -1.1 871,376 - RR42_RS24660 0.84 +0.1 871,376 - RR42_RS24660 0.84 -1.1 871,391 + RR42_RS24660 0.84 +1.0 871,392 - RR42_RS24660 0.84 +0.3 871,392 - RR42_RS24660 0.84 -2.5 871,392 - RR42_RS24660 0.84 +0.1 871,697 - -1.5 871,795 + -2.5 871,854 + +0.4 871,904 + -0.2 871,905 - -0.4 872,088 + RR42_RS24665 0.19 -0.8 872,099 + RR42_RS24665 0.20 -2.2 872,990 + -0.1 872,990 + +0.8 872,991 - -0.8 873,061 + +0.8 873,223 + RR42_RS24670 0.29 -0.1 873,224 - RR42_RS24670 0.29 -0.3 873,224 - RR42_RS24670 0.29 -1.7 873,224 - RR42_RS24670 0.29 -0.2 873,224 - RR42_RS24670 0.29 +0.8 873,290 + RR42_RS24670 0.41 -1.0 873,290 + RR42_RS24670 0.41 -0.0 873,291 - RR42_RS24670 0.41 -1.2 873,291 - RR42_RS24670 0.41 -0.5 873,291 - RR42_RS24670 0.41 -1.7 873,323 + RR42_RS24670 0.47 +0.3 873,324 - RR42_RS24670 0.47 -0.7 873,324 - RR42_RS24670 0.47 -0.9 873,324 - RR42_RS24670 0.47 -0.0 873,475 + RR42_RS24670 0.74 -0.5 873,555 + RR42_RS24670 0.89 -1.5 873,556 - RR42_RS24670 0.89 -2.6 873,605 + +0.3 873,606 - -1.2 873,692 + +0.1 873,692 + -0.4 873,692 + +0.1 873,692 + -0.3 873,701 + +0.8 873,702 - +1.1 873,702 - +0.1 873,702 - -0.7 873,702 - +0.1 873,702 - -0.2 873,702 - +0.5 873,851 - +0.1 873,946 + +1.3
Or see this region's nucleotide sequence