Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22560 and RR42_RS22565 are separated by 11 nucleotides RR42_RS22565 and RR42_RS22570 are separated by 273 nucleotides RR42_RS22570 and RR42_RS22575 are separated by 284 nucleotides
RR42_RS22560: RR42_RS22560 - hypothetical protein, at 398,970 to 399,152
_RS22560
RR42_RS22565: RR42_RS22565 - CopG family transcriptional regulator, at 399,164 to 399,553
_RS22565
RR42_RS22570: RR42_RS22570 - SAM-dependent methyltransferase, at 399,827 to 400,555
_RS22570
RR42_RS22575: RR42_RS22575 - hypothetical protein, at 400,840 to 401,649
_RS22575
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1
2 at 398.853 kb on - strand at 399.150 kb on + strand at 399.150 kb on + strand at 399.630 kb on - strand at 399.630 kb on - strand at 399.691 kb on + strand at 399.692 kb on - strand at 399.692 kb on - strand at 399.716 kb on + strand at 399.725 kb on + strand at 399.726 kb on - strand at 399.733 kb on + strand at 399.733 kb on + strand at 399.733 kb on + strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.734 kb on - strand at 399.768 kb on + strand at 399.769 kb on - strand at 399.926 kb on + strand, within RR42_RS22570 at 400.326 kb on - strand, within RR42_RS22570 at 400.612 kb on - strand at 400.621 kb on - strand at 400.685 kb on + strand at 400.686 kb on - strand at 400.844 kb on + strand at 400.844 kb on + strand at 400.845 kb on - strand at 401.001 kb on + strand, within RR42_RS22575 at 401.416 kb on - strand, within RR42_RS22575
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 398,853 - +0.8 399,150 + +0.1 399,150 + -0.9 399,630 - -0.0 399,630 - +0.8 399,691 + -0.4 399,692 - +0.8 399,692 - +0.2 399,716 + -1.0 399,725 + -1.0 399,726 - -0.4 399,733 + +0.6 399,733 + -0.3 399,733 + +0.4 399,734 - +0.2 399,734 - -0.8 399,734 - +1.4 399,734 - -0.8 399,768 + +0.1 399,769 - +0.8 399,926 + RR42_RS22570 0.14 -0.8 400,326 - RR42_RS22570 0.68 -0.9 400,612 - +0.3 400,621 - -0.2 400,685 + -0.6 400,686 - +2.2 400,844 + +0.2 400,844 + +0.1 400,845 - -0.0 401,001 + RR42_RS22575 0.20 +0.3 401,416 - RR42_RS22575 0.71 -0.3
Or see this region's nucleotide sequence