Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21665

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21655 and RR42_RS21660 are separated by 7 nucleotidesRR42_RS21660 and RR42_RS21665 are separated by 106 nucleotidesRR42_RS21665 and RR42_RS21670 are separated by 99 nucleotidesRR42_RS21670 and RR42_RS21675 are separated by 329 nucleotides RR42_RS21655: RR42_RS21655 - aldehyde dehydrogenase, at 187,036 to 189,300 _RS21655 RR42_RS21660: RR42_RS21660 - MarR family transcriptional regulator, at 189,308 to 189,820 _RS21660 RR42_RS21665: RR42_RS21665 - cobalt transporter, at 189,927 to 190,907 _RS21665 RR42_RS21670: RR42_RS21670 - transcriptional regulator, at 191,007 to 191,285 _RS21670 RR42_RS21675: RR42_RS21675 - membrane protein, at 191,615 to 192,055 _RS21675 Position (kb) 189 190 191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 189.309 kb on + strandat 189.966 kb on + strandat 189.968 kb on + strandat 189.969 kb on - strandat 189.969 kb on - strandat 189.969 kb on - strandat 189.969 kb on - strandat 190.146 kb on + strand, within RR42_RS21665at 190.146 kb on + strand, within RR42_RS21665at 190.351 kb on + strand, within RR42_RS21665at 190.351 kb on + strand, within RR42_RS21665at 190.352 kb on - strand, within RR42_RS21665at 190.468 kb on - strand, within RR42_RS21665at 190.483 kb on - strand, within RR42_RS21665at 190.483 kb on - strand, within RR42_RS21665at 190.483 kb on - strand, within RR42_RS21665at 190.485 kb on - strand, within RR42_RS21665at 190.529 kb on - strand, within RR42_RS21665at 190.672 kb on + strand, within RR42_RS21665at 190.733 kb on + strand, within RR42_RS21665at 190.733 kb on + strand, within RR42_RS21665at 190.733 kb on + strand, within RR42_RS21665at 190.734 kb on - strand, within RR42_RS21665at 190.866 kb on + strandat 190.866 kb on + strandat 190.901 kb on + strandat 190.901 kb on + strandat 190.901 kb on + strandat 190.901 kb on + strandat 190.901 kb on + strandat 190.901 kb on + strandat 190.902 kb on - strandat 190.902 kb on - strandat 190.902 kb on - strandat 190.902 kb on - strandat 190.985 kb on + strandat 191.276 kb on + strandat 191.276 kb on + strandat 191.301 kb on - strandat 191.303 kb on - strandat 191.317 kb on + strandat 191.317 kb on + strandat 191.317 kb on + strandat 191.873 kb on + strand, within RR42_RS21675at 191.874 kb on - strand, within RR42_RS21675at 191.874 kb on - strand, within RR42_RS21675

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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189,309 + +0.6
189,966 + -2.3
189,968 + -2.4
189,969 - -2.0
189,969 - -3.2
189,969 - -2.7
189,969 - -3.4
190,146 + RR42_RS21665 0.22 -2.8
190,146 + RR42_RS21665 0.22 -2.8
190,351 + RR42_RS21665 0.43 -2.9
190,351 + RR42_RS21665 0.43 -2.6
190,352 - RR42_RS21665 0.43 -1.6
190,468 - RR42_RS21665 0.55 -3.4
190,483 - RR42_RS21665 0.57 -2.5
190,483 - RR42_RS21665 0.57 -3.1
190,483 - RR42_RS21665 0.57 -4.3
190,485 - RR42_RS21665 0.57 -2.4
190,529 - RR42_RS21665 0.61 -3.2
190,672 + RR42_RS21665 0.76 +1.0
190,733 + RR42_RS21665 0.82 -2.4
190,733 + RR42_RS21665 0.82 -1.7
190,733 + RR42_RS21665 0.82 -3.6
190,734 - RR42_RS21665 0.82 -3.5
190,866 + -2.7
190,866 + -2.9
190,901 + -2.4
190,901 + -1.7
190,901 + -4.0
190,901 + -2.4
190,901 + -4.2
190,901 + -1.0
190,902 - -1.3
190,902 - -3.0
190,902 - -0.6
190,902 - -2.7
190,985 + -3.0
191,276 + -1.3
191,276 + -0.4
191,301 - -0.2
191,303 - +0.0
191,317 + +0.8
191,317 + +0.0
191,317 + -0.5
191,873 + RR42_RS21675 0.59 +0.5
191,874 - RR42_RS21675 0.59 -1.0
191,874 - RR42_RS21675 0.59 -0.1

Or see this region's nucleotide sequence