Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16350

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16345 and RR42_RS16350 are separated by 175 nucleotidesRR42_RS16350 and RR42_RS16355 are separated by 285 nucleotides RR42_RS16345: RR42_RS16345 - hypothetical protein, at 3,540,707 to 3,541,885 _RS16345 RR42_RS16350: RR42_RS16350 - hypothetical protein, at 3,542,061 to 3,542,273 _RS16350 RR42_RS16355: RR42_RS16355 - hypothetical protein, at 3,542,559 to 3,543,650 _RS16355 Position (kb) 3542 3543Strain fitness (log2 ratio) -2 -1 0 1at 3541.115 kb on + strand, within RR42_RS16345at 3541.417 kb on + strand, within RR42_RS16345at 3541.417 kb on + strand, within RR42_RS16345at 3541.417 kb on + strand, within RR42_RS16345at 3541.517 kb on + strand, within RR42_RS16345at 3541.754 kb on - strand, within RR42_RS16345at 3542.055 kb on + strandat 3542.056 kb on - strandat 3542.199 kb on + strand, within RR42_RS16350at 3542.199 kb on + strand, within RR42_RS16350at 3542.242 kb on - strand, within RR42_RS16350at 3542.505 kb on + strandat 3542.505 kb on + strandat 3542.533 kb on + strandat 3542.534 kb on - strandat 3542.698 kb on + strand, within RR42_RS16355at 3542.698 kb on + strand, within RR42_RS16355at 3542.734 kb on + strand, within RR42_RS16355at 3542.734 kb on + strand, within RR42_RS16355at 3542.734 kb on + strand, within RR42_RS16355at 3542.735 kb on - strand, within RR42_RS16355at 3542.738 kb on + strand, within RR42_RS16355at 3542.738 kb on + strand, within RR42_RS16355at 3542.738 kb on + strand, within RR42_RS16355at 3542.740 kb on + strand, within RR42_RS16355at 3542.740 kb on + strand, within RR42_RS16355at 3542.740 kb on + strand, within RR42_RS16355at 3542.740 kb on + strand, within RR42_RS16355at 3542.741 kb on - strand, within RR42_RS16355at 3542.741 kb on - strand, within RR42_RS16355at 3542.741 kb on - strand, within RR42_RS16355at 3542.741 kb on - strand, within RR42_RS16355at 3542.800 kb on + strand, within RR42_RS16355at 3542.800 kb on + strand, within RR42_RS16355at 3542.800 kb on + strand, within RR42_RS16355at 3542.801 kb on - strand, within RR42_RS16355at 3542.842 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.870 kb on + strand, within RR42_RS16355at 3542.871 kb on - strand, within RR42_RS16355at 3542.871 kb on - strand, within RR42_RS16355at 3542.871 kb on - strand, within RR42_RS16355at 3542.871 kb on - strand, within RR42_RS16355at 3542.871 kb on - strand, within RR42_RS16355at 3542.874 kb on + strand, within RR42_RS16355at 3542.874 kb on + strand, within RR42_RS16355at 3542.874 kb on + strand, within RR42_RS16355at 3542.874 kb on + strand, within RR42_RS16355at 3542.875 kb on - strand, within RR42_RS16355at 3542.875 kb on - strand, within RR42_RS16355at 3542.875 kb on - strand, within RR42_RS16355at 3542.886 kb on - strand, within RR42_RS16355at 3542.939 kb on + strand, within RR42_RS16355at 3543.019 kb on + strand, within RR42_RS16355at 3543.116 kb on - strand, within RR42_RS16355at 3543.156 kb on - strand, within RR42_RS16355at 3543.157 kb on + strand, within RR42_RS16355

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,541,115 + RR42_RS16345 0.35 -0.3
3,541,417 + RR42_RS16345 0.60 +0.3
3,541,417 + RR42_RS16345 0.60 -0.6
3,541,417 + RR42_RS16345 0.60 -0.5
3,541,517 + RR42_RS16345 0.69 +1.0
3,541,754 - RR42_RS16345 0.89 +0.4
3,542,055 + +0.4
3,542,056 - +1.0
3,542,199 + RR42_RS16350 0.65 +0.2
3,542,199 + RR42_RS16350 0.65 +0.9
3,542,242 - RR42_RS16350 0.85 +0.3
3,542,505 + -0.3
3,542,505 + -1.9
3,542,533 + -1.0
3,542,534 - +0.3
3,542,698 + RR42_RS16355 0.13 -0.5
3,542,698 + RR42_RS16355 0.13 +0.7
3,542,734 + RR42_RS16355 0.16 +1.0
3,542,734 + RR42_RS16355 0.16 +0.1
3,542,734 + RR42_RS16355 0.16 +0.6
3,542,735 - RR42_RS16355 0.16 -0.6
3,542,738 + RR42_RS16355 0.16 +0.1
3,542,738 + RR42_RS16355 0.16 -0.2
3,542,738 + RR42_RS16355 0.16 +0.0
3,542,740 + RR42_RS16355 0.17 -0.5
3,542,740 + RR42_RS16355 0.17 +0.8
3,542,740 + RR42_RS16355 0.17 +0.6
3,542,740 + RR42_RS16355 0.17 -0.0
3,542,741 - RR42_RS16355 0.17 -0.7
3,542,741 - RR42_RS16355 0.17 +0.6
3,542,741 - RR42_RS16355 0.17 -0.7
3,542,741 - RR42_RS16355 0.17 -0.2
3,542,800 + RR42_RS16355 0.22 -0.2
3,542,800 + RR42_RS16355 0.22 -0.0
3,542,800 + RR42_RS16355 0.22 +0.8
3,542,801 - RR42_RS16355 0.22 +0.0
3,542,842 + RR42_RS16355 0.26 -0.2
3,542,870 + RR42_RS16355 0.28 +0.6
3,542,870 + RR42_RS16355 0.28 -0.4
3,542,870 + RR42_RS16355 0.28 -0.8
3,542,870 + RR42_RS16355 0.28 +0.1
3,542,870 + RR42_RS16355 0.28 +0.2
3,542,870 + RR42_RS16355 0.28 -0.2
3,542,870 + RR42_RS16355 0.28 +1.4
3,542,871 - RR42_RS16355 0.29 +0.4
3,542,871 - RR42_RS16355 0.29 +0.1
3,542,871 - RR42_RS16355 0.29 +0.8
3,542,871 - RR42_RS16355 0.29 -0.0
3,542,871 - RR42_RS16355 0.29 -2.2
3,542,874 + RR42_RS16355 0.29 -1.0
3,542,874 + RR42_RS16355 0.29 +1.5
3,542,874 + RR42_RS16355 0.29 +1.2
3,542,874 + RR42_RS16355 0.29 +0.3
3,542,875 - RR42_RS16355 0.29 -0.1
3,542,875 - RR42_RS16355 0.29 +0.8
3,542,875 - RR42_RS16355 0.29 -1.1
3,542,886 - RR42_RS16355 0.30 -0.6
3,542,939 + RR42_RS16355 0.35 -0.2
3,543,019 + RR42_RS16355 0.42 +0.2
3,543,116 - RR42_RS16355 0.51 +0.5
3,543,156 - RR42_RS16355 0.55 +0.2
3,543,157 + RR42_RS16355 0.55 -0.1

Or see this region's nucleotide sequence