Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14530

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14525 and RR42_RS14530 are separated by 110 nucleotidesRR42_RS14530 and RR42_RS14535 are separated by 457 nucleotides RR42_RS14525: RR42_RS14525 - cysteine synthase, at 3,126,306 to 3,127,442 _RS14525 RR42_RS14530: RR42_RS14530 - 2-hydroxyacid dehydrogenase, at 3,127,553 to 3,127,948 _RS14530 RR42_RS14535: RR42_RS14535 - hypothetical protein, at 3,128,406 to 3,129,551 _RS14535 Position (kb) 3127 3128Strain fitness (log2 ratio) -2 -1 0 1at 3126.674 kb on + strand, within RR42_RS14525at 3126.730 kb on - strand, within RR42_RS14525at 3126.776 kb on - strand, within RR42_RS14525at 3126.825 kb on - strand, within RR42_RS14525at 3126.825 kb on - strand, within RR42_RS14525at 3126.836 kb on - strand, within RR42_RS14525at 3126.950 kb on + strand, within RR42_RS14525at 3126.988 kb on + strand, within RR42_RS14525at 3126.989 kb on - strand, within RR42_RS14525at 3127.032 kb on - strand, within RR42_RS14525at 3127.048 kb on + strand, within RR42_RS14525at 3127.049 kb on - strand, within RR42_RS14525at 3127.091 kb on - strand, within RR42_RS14525at 3127.174 kb on + strand, within RR42_RS14525at 3127.458 kb on - strandat 3127.507 kb on - strandat 3127.644 kb on + strand, within RR42_RS14530at 3127.644 kb on + strand, within RR42_RS14530at 3127.645 kb on - strand, within RR42_RS14530at 3127.765 kb on + strand, within RR42_RS14530at 3127.766 kb on - strand, within RR42_RS14530at 3127.858 kb on - strand, within RR42_RS14530at 3127.858 kb on - strand, within RR42_RS14530at 3127.977 kb on + strandat 3127.977 kb on + strandat 3128.019 kb on - strandat 3128.055 kb on + strandat 3128.059 kb on - strandat 3128.061 kb on + strandat 3128.062 kb on - strandat 3128.062 kb on - strandat 3128.062 kb on - strandat 3128.192 kb on + strandat 3128.193 kb on - strandat 3128.346 kb on - strandat 3128.424 kb on + strandat 3128.424 kb on + strandat 3128.523 kb on - strand, within RR42_RS14535at 3128.687 kb on + strand, within RR42_RS14535at 3128.697 kb on + strand, within RR42_RS14535at 3128.753 kb on + strand, within RR42_RS14535at 3128.757 kb on + strand, within RR42_RS14535at 3128.757 kb on + strand, within RR42_RS14535at 3128.758 kb on - strand, within RR42_RS14535at 3128.758 kb on - strand, within RR42_RS14535at 3128.812 kb on - strand, within RR42_RS14535at 3128.823 kb on + strand, within RR42_RS14535at 3128.824 kb on - strand, within RR42_RS14535at 3128.826 kb on - strand, within RR42_RS14535

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,126,674 + RR42_RS14525 0.32 -0.2
3,126,730 - RR42_RS14525 0.37 +1.1
3,126,776 - RR42_RS14525 0.41 +0.2
3,126,825 - RR42_RS14525 0.46 -0.6
3,126,825 - RR42_RS14525 0.46 +0.6
3,126,836 - RR42_RS14525 0.47 +0.6
3,126,950 + RR42_RS14525 0.57 +0.0
3,126,988 + RR42_RS14525 0.60 -0.2
3,126,989 - RR42_RS14525 0.60 +1.1
3,127,032 - RR42_RS14525 0.64 -0.3
3,127,048 + RR42_RS14525 0.65 -0.2
3,127,049 - RR42_RS14525 0.65 -0.2
3,127,091 - RR42_RS14525 0.69 +0.7
3,127,174 + RR42_RS14525 0.76 +0.1
3,127,458 - +0.0
3,127,507 - +0.7
3,127,644 + RR42_RS14530 0.23 -1.0
3,127,644 + RR42_RS14530 0.23 -0.3
3,127,645 - RR42_RS14530 0.23 -0.1
3,127,765 + RR42_RS14530 0.54 -0.9
3,127,766 - RR42_RS14530 0.54 -1.9
3,127,858 - RR42_RS14530 0.77 -2.5
3,127,858 - RR42_RS14530 0.77 -0.1
3,127,977 + +0.3
3,127,977 + +1.4
3,128,019 - -0.8
3,128,055 + +0.1
3,128,059 - -0.7
3,128,061 + -0.3
3,128,062 - +0.4
3,128,062 - +0.1
3,128,062 - +0.1
3,128,192 + +0.0
3,128,193 - -0.2
3,128,346 - +0.7
3,128,424 + +0.4
3,128,424 + +0.0
3,128,523 - RR42_RS14535 0.10 -0.7
3,128,687 + RR42_RS14535 0.25 -1.2
3,128,697 + RR42_RS14535 0.25 -0.1
3,128,753 + RR42_RS14535 0.30 +0.9
3,128,757 + RR42_RS14535 0.31 +0.2
3,128,757 + RR42_RS14535 0.31 +0.0
3,128,758 - RR42_RS14535 0.31 +0.2
3,128,758 - RR42_RS14535 0.31 -0.2
3,128,812 - RR42_RS14535 0.35 -1.1
3,128,823 + RR42_RS14535 0.36 -0.5
3,128,824 - RR42_RS14535 0.36 -1.4
3,128,826 - RR42_RS14535 0.37 -0.4

Or see this region's nucleotide sequence