Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14400 and RR42_RS14405 are separated by 295 nucleotides RR42_RS14405 and RR42_RS14410 overlap by 1 nucleotides RR42_RS14410 and RR42_RS14415 overlap by 4 nucleotides
RR42_RS14400: RR42_RS14400 - isopropylmalate isomerase, at 3,096,533 to 3,097,942
_RS14400
RR42_RS14405: RR42_RS14405 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,098,238 to 3,098,939
_RS14405
RR42_RS14410: RR42_RS14410 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,098,939 to 3,099,718
_RS14410
RR42_RS14415: RR42_RS14415 - leucine/isoleucine/valine transporter permease subunit, at 3,099,715 to 3,100,989
_RS14415
Position (kb)
3098
3099 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3097.347 kb on + strand, within RR42_RS14400 at 3097.348 kb on - strand, within RR42_RS14400 at 3097.867 kb on - strand at 3097.927 kb on - strand at 3098.133 kb on + strand at 3098.134 kb on - strand at 3098.251 kb on + strand at 3098.252 kb on - strand at 3098.330 kb on - strand, within RR42_RS14405 at 3098.590 kb on + strand, within RR42_RS14405 at 3098.591 kb on - strand, within RR42_RS14405 at 3098.591 kb on - strand, within RR42_RS14405 at 3098.591 kb on - strand, within RR42_RS14405 at 3098.915 kb on + strand at 3098.955 kb on + strand at 3098.956 kb on - strand at 3099.240 kb on + strand, within RR42_RS14410 at 3099.241 kb on - strand, within RR42_RS14410 at 3099.543 kb on + strand, within RR42_RS14410 at 3099.543 kb on + strand, within RR42_RS14410 at 3099.544 kb on - strand, within RR42_RS14410
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,097,347 + RR42_RS14400 0.58 -3.1 3,097,348 - RR42_RS14400 0.58 -1.9 3,097,867 - -3.1 3,097,927 - -4.1 3,098,133 + +1.7 3,098,134 - +0.4 3,098,251 + -0.1 3,098,252 - -1.5 3,098,330 - RR42_RS14405 0.13 +0.7 3,098,590 + RR42_RS14405 0.50 -1.0 3,098,591 - RR42_RS14405 0.50 -2.6 3,098,591 - RR42_RS14405 0.50 +0.3 3,098,591 - RR42_RS14405 0.50 -1.2 3,098,915 + +0.6 3,098,955 + -0.6 3,098,956 - -0.5 3,099,240 + RR42_RS14410 0.39 +0.3 3,099,241 - RR42_RS14410 0.39 +0.5 3,099,543 + RR42_RS14410 0.77 +0.1 3,099,543 + RR42_RS14410 0.77 -0.8 3,099,544 - RR42_RS14410 0.78 +0.9
Or see this region's nucleotide sequence