Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13130

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13125 and RR42_RS13130 are separated by 172 nucleotidesRR42_RS13130 and RR42_RS13135 are separated by 85 nucleotides RR42_RS13125: RR42_RS13125 - pyrrolo-quinoline quinone, at 2,827,989 to 2,829,110 _RS13125 RR42_RS13130: RR42_RS13130 - membrane protein, at 2,829,283 to 2,829,915 _RS13130 RR42_RS13135: RR42_RS13135 - histidyl-tRNA synthetase, at 2,830,001 to 2,831,389 _RS13135 Position (kb) 2829 2830Strain fitness (log2 ratio) -1 0 1 2at 2828.618 kb on - strand, within RR42_RS13125at 2828.618 kb on - strand, within RR42_RS13125at 2828.921 kb on - strand, within RR42_RS13125at 2829.435 kb on - strand, within RR42_RS13130at 2829.615 kb on - strand, within RR42_RS13130at 2829.747 kb on - strand, within RR42_RS13130at 2829.747 kb on - strand, within RR42_RS13130at 2829.909 kb on - strandat 2829.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,828,618 - RR42_RS13125 0.56 -1.0
2,828,618 - RR42_RS13125 0.56 +1.1
2,828,921 - RR42_RS13125 0.83 +0.7
2,829,435 - RR42_RS13130 0.24 +1.8
2,829,615 - RR42_RS13130 0.52 +1.4
2,829,747 - RR42_RS13130 0.73 -0.1
2,829,747 - RR42_RS13130 0.73 -0.1
2,829,909 - +0.7
2,829,944 - -0.5

Or see this region's nucleotide sequence