Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05115

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05110 and RR42_RS05115 are separated by 153 nucleotidesRR42_RS05115 and RR42_RS05120 are separated by 138 nucleotides RR42_RS05110: RR42_RS05110 - betaine-aldehyde dehydrogenase, at 1,127,574 to 1,129,043 _RS05110 RR42_RS05115: RR42_RS05115 - LysR family transcriptional regulator, at 1,129,197 to 1,130,165 _RS05115 RR42_RS05120: RR42_RS05120 - ABC transporter substrate-binding protein, at 1,130,304 to 1,131,284 _RS05120 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1at 1128.619 kb on + strand, within RR42_RS05110at 1128.620 kb on - strand, within RR42_RS05110at 1128.658 kb on + strand, within RR42_RS05110at 1128.660 kb on + strand, within RR42_RS05110at 1128.660 kb on + strand, within RR42_RS05110at 1128.661 kb on - strand, within RR42_RS05110at 1128.847 kb on - strand, within RR42_RS05110at 1129.097 kb on + strandat 1129.098 kb on - strandat 1129.098 kb on - strandat 1129.098 kb on - strandat 1129.100 kb on - strandat 1129.100 kb on - strandat 1129.123 kb on + strandat 1129.629 kb on - strand, within RR42_RS05115at 1129.888 kb on + strand, within RR42_RS05115at 1129.889 kb on - strand, within RR42_RS05115at 1130.242 kb on - strandat 1130.528 kb on + strand, within RR42_RS05120at 1130.548 kb on + strand, within RR42_RS05120at 1130.668 kb on + strand, within RR42_RS05120at 1130.809 kb on - strand, within RR42_RS05120at 1131.010 kb on + strand, within RR42_RS05120at 1131.011 kb on - strand, within RR42_RS05120at 1131.038 kb on - strand, within RR42_RS05120

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,128,619 + RR42_RS05110 0.71 -0.2
1,128,620 - RR42_RS05110 0.71 -0.2
1,128,658 + RR42_RS05110 0.74 +0.3
1,128,660 + RR42_RS05110 0.74 -3.2
1,128,660 + RR42_RS05110 0.74 +0.5
1,128,661 - RR42_RS05110 0.74 +0.7
1,128,847 - RR42_RS05110 0.87 -1.4
1,129,097 + -0.6
1,129,098 - +0.7
1,129,098 - +0.1
1,129,098 - +0.3
1,129,100 - -0.1
1,129,100 - +0.2
1,129,123 + -0.6
1,129,629 - RR42_RS05115 0.45 -0.9
1,129,888 + RR42_RS05115 0.71 +0.1
1,129,889 - RR42_RS05115 0.71 -0.9
1,130,242 - +0.2
1,130,528 + RR42_RS05120 0.23 -0.3
1,130,548 + RR42_RS05120 0.25 -0.4
1,130,668 + RR42_RS05120 0.37 -1.1
1,130,809 - RR42_RS05120 0.51 -0.4
1,131,010 + RR42_RS05120 0.72 +0.3
1,131,011 - RR42_RS05120 0.72 -1.8
1,131,038 - RR42_RS05120 0.75 +0.9

Or see this region's nucleotide sequence