Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01005

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01000 and RR42_RS01005 are separated by 69 nucleotidesRR42_RS01005 and RR42_RS01010 are separated by 291 nucleotidesRR42_RS01010 and RR42_RS01015 are separated by 65 nucleotides RR42_RS01000: RR42_RS01000 - hypothetical protein, at 234,950 to 237,358 _RS01000 RR42_RS01005: RR42_RS01005 - ABC transporter substrate-binding protein, at 237,428 to 239,014 _RS01005 RR42_RS01010: RR42_RS01010 - glutathione S-transferase, at 239,306 to 239,929 _RS01010 RR42_RS01015: RR42_RS01015 - TonB-dependent receptor, at 239,995 to 242,145 _RS01015 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 236.619 kb on + strand, within RR42_RS01000at 236.724 kb on - strand, within RR42_RS01000at 236.724 kb on - strand, within RR42_RS01000at 236.975 kb on - strand, within RR42_RS01000at 236.978 kb on + strand, within RR42_RS01000at 236.979 kb on - strand, within RR42_RS01000at 236.979 kb on - strand, within RR42_RS01000at 237.191 kb on - strandat 237.290 kb on + strandat 237.291 kb on - strandat 237.422 kb on + strandat 237.456 kb on + strandat 237.457 kb on - strandat 237.490 kb on - strandat 237.490 kb on - strandat 237.509 kb on + strandat 237.509 kb on + strandat 237.510 kb on - strandat 237.510 kb on - strandat 237.510 kb on - strandat 237.525 kb on + strandat 237.544 kb on - strandat 237.649 kb on + strand, within RR42_RS01005at 237.649 kb on + strand, within RR42_RS01005at 237.649 kb on + strand, within RR42_RS01005at 237.649 kb on + strand, within RR42_RS01005at 237.650 kb on - strand, within RR42_RS01005at 237.650 kb on - strand, within RR42_RS01005at 237.650 kb on - strand, within RR42_RS01005at 237.650 kb on - strand, within RR42_RS01005at 237.650 kb on - strand, within RR42_RS01005at 237.651 kb on + strand, within RR42_RS01005at 237.693 kb on + strand, within RR42_RS01005at 237.693 kb on + strand, within RR42_RS01005at 237.693 kb on + strand, within RR42_RS01005at 237.694 kb on - strand, within RR42_RS01005at 237.694 kb on - strand, within RR42_RS01005at 237.888 kb on + strand, within RR42_RS01005at 237.888 kb on + strand, within RR42_RS01005at 238.203 kb on + strand, within RR42_RS01005at 238.204 kb on - strand, within RR42_RS01005at 238.204 kb on - strand, within RR42_RS01005at 238.358 kb on + strand, within RR42_RS01005at 238.389 kb on + strand, within RR42_RS01005at 238.389 kb on + strand, within RR42_RS01005at 238.389 kb on + strand, within RR42_RS01005at 238.390 kb on - strand, within RR42_RS01005at 238.390 kb on - strand, within RR42_RS01005at 238.390 kb on - strand, within RR42_RS01005at 238.446 kb on + strand, within RR42_RS01005at 238.447 kb on - strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.527 kb on + strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.528 kb on - strand, within RR42_RS01005at 238.629 kb on + strand, within RR42_RS01005at 238.630 kb on - strand, within RR42_RS01005at 238.630 kb on - strand, within RR42_RS01005at 238.630 kb on - strand, within RR42_RS01005at 238.683 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.840 kb on + strand, within RR42_RS01005at 238.841 kb on - strand, within RR42_RS01005at 238.841 kb on - strand, within RR42_RS01005at 238.841 kb on - strand, within RR42_RS01005at 238.878 kb on + strandat 239.030 kb on - strandat 239.211 kb on + strandat 239.261 kb on + strandat 239.261 kb on + strandat 239.263 kb on + strandat 239.719 kb on + strand, within RR42_RS01010at 239.720 kb on - strand, within RR42_RS01010at 239.720 kb on - strand, within RR42_RS01010at 239.759 kb on + strand, within RR42_RS01010at 239.759 kb on + strand, within RR42_RS01010at 239.760 kb on - strand, within RR42_RS01010at 239.822 kb on + strand, within RR42_RS01010at 239.822 kb on + strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.850 kb on - strand, within RR42_RS01010at 239.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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236,619 + RR42_RS01000 0.69 +0.0
236,724 - RR42_RS01000 0.74 +0.4
236,724 - RR42_RS01000 0.74 -0.4
236,975 - RR42_RS01000 0.84 -0.2
236,978 + RR42_RS01000 0.84 +0.7
236,979 - RR42_RS01000 0.84 -0.6
236,979 - RR42_RS01000 0.84 +0.1
237,191 - +0.6
237,290 + -0.6
237,291 - -0.1
237,422 + -0.4
237,456 + +0.2
237,457 - -0.7
237,490 - +0.7
237,490 - -0.3
237,509 + +0.1
237,509 + -0.5
237,510 - -0.1
237,510 - +0.5
237,510 - +0.9
237,525 + -0.7
237,544 - -0.3
237,649 + RR42_RS01005 0.14 -1.1
237,649 + RR42_RS01005 0.14 -0.2
237,649 + RR42_RS01005 0.14 +0.4
237,649 + RR42_RS01005 0.14 +0.4
237,650 - RR42_RS01005 0.14 -0.7
237,650 - RR42_RS01005 0.14 -0.6
237,650 - RR42_RS01005 0.14 -0.2
237,650 - RR42_RS01005 0.14 +0.3
237,650 - RR42_RS01005 0.14 -0.2
237,651 + RR42_RS01005 0.14 +0.3
237,693 + RR42_RS01005 0.17 -0.4
237,693 + RR42_RS01005 0.17 -0.8
237,693 + RR42_RS01005 0.17 -0.1
237,694 - RR42_RS01005 0.17 -0.4
237,694 - RR42_RS01005 0.17 +0.2
237,888 + RR42_RS01005 0.29 -0.0
237,888 + RR42_RS01005 0.29 -0.1
238,203 + RR42_RS01005 0.49 -0.1
238,204 - RR42_RS01005 0.49 +0.2
238,204 - RR42_RS01005 0.49 -0.5
238,358 + RR42_RS01005 0.59 -0.2
238,389 + RR42_RS01005 0.61 +0.7
238,389 + RR42_RS01005 0.61 -1.1
238,389 + RR42_RS01005 0.61 -0.4
238,390 - RR42_RS01005 0.61 -1.9
238,390 - RR42_RS01005 0.61 -0.8
238,390 - RR42_RS01005 0.61 +0.2
238,446 + RR42_RS01005 0.64 -0.1
238,447 - RR42_RS01005 0.64 +0.6
238,527 + RR42_RS01005 0.69 -1.0
238,527 + RR42_RS01005 0.69 -0.4
238,527 + RR42_RS01005 0.69 +0.2
238,527 + RR42_RS01005 0.69 -0.1
238,527 + RR42_RS01005 0.69 +1.0
238,527 + RR42_RS01005 0.69 +0.6
238,527 + RR42_RS01005 0.69 -0.5
238,528 - RR42_RS01005 0.69 -0.2
238,528 - RR42_RS01005 0.69 +0.0
238,528 - RR42_RS01005 0.69 +0.7
238,528 - RR42_RS01005 0.69 -0.4
238,528 - RR42_RS01005 0.69 +0.6
238,528 - RR42_RS01005 0.69 -0.1
238,528 - RR42_RS01005 0.69 +0.3
238,528 - RR42_RS01005 0.69 -0.0
238,528 - RR42_RS01005 0.69 -1.6
238,629 + RR42_RS01005 0.76 -2.0
238,630 - RR42_RS01005 0.76 +0.4
238,630 - RR42_RS01005 0.76 -0.0
238,630 - RR42_RS01005 0.76 -0.0
238,683 + RR42_RS01005 0.79 -1.2
238,840 + RR42_RS01005 0.89 -1.2
238,840 + RR42_RS01005 0.89 +0.2
238,840 + RR42_RS01005 0.89 -1.4
238,840 + RR42_RS01005 0.89 +0.3
238,840 + RR42_RS01005 0.89 +1.5
238,840 + RR42_RS01005 0.89 +0.0
238,841 - RR42_RS01005 0.89 -0.1
238,841 - RR42_RS01005 0.89 +0.7
238,841 - RR42_RS01005 0.89 -0.5
238,878 + +0.0
239,030 - +0.1
239,211 + -0.3
239,261 + -0.5
239,261 + +0.1
239,263 + -0.1
239,719 + RR42_RS01010 0.66 -1.6
239,720 - RR42_RS01010 0.66 -0.2
239,720 - RR42_RS01010 0.66 -0.2
239,759 + RR42_RS01010 0.73 +4.2
239,759 + RR42_RS01010 0.73 +0.7
239,760 - RR42_RS01010 0.73 -0.0
239,822 + RR42_RS01010 0.83 -0.1
239,822 + RR42_RS01010 0.83 -0.9
239,823 - RR42_RS01010 0.83 -1.6
239,823 - RR42_RS01010 0.83 +0.0
239,823 - RR42_RS01010 0.83 +0.4
239,850 - RR42_RS01010 0.87 -1.2
239,868 - -0.3

Or see this region's nucleotide sequence