Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00940

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00930 and RR42_RS00935 overlap by 4 nucleotidesRR42_RS00935 and RR42_RS00940 are separated by 57 nucleotides RR42_RS00930: RR42_RS00930 - 8-amino-7-oxononanoate synthase, at 222,278 to 223,495 _RS00930 RR42_RS00935: RR42_RS00935 - dethiobiotin synthetase, at 223,492 to 224,214 _RS00935 RR42_RS00940: RR42_RS00940 - biotin synthase, at 224,272 to 225,318 _RS00940 Position (kb) 224 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 224.252 kb on + strandat 224.410 kb on + strand, within RR42_RS00940at 224.410 kb on + strand, within RR42_RS00940at 224.810 kb on - strand, within RR42_RS00940at 224.812 kb on + strand, within RR42_RS00940at 224.812 kb on + strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.813 kb on - strand, within RR42_RS00940at 224.829 kb on + strand, within RR42_RS00940at 224.845 kb on + strand, within RR42_RS00940at 224.846 kb on - strand, within RR42_RS00940at 224.846 kb on - strand, within RR42_RS00940at 224.872 kb on + strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940at 224.873 kb on - strand, within RR42_RS00940at 225.220 kb on + strandat 225.307 kb on + strandat 225.308 kb on - strandat 225.509 kb on + strandat 225.509 kb on + strandat 225.619 kb on - strandat 225.789 kb on + strandat 225.789 kb on + strandat 225.789 kb on + strandat 225.789 kb on + strandat 225.790 kb on - strandat 225.790 kb on - strandat 225.853 kb on - strandat 226.163 kb on + strandat 226.220 kb on + strandat 226.221 kb on - strandat 226.231 kb on + strandat 226.231 kb on + strandat 226.231 kb on + strandat 226.231 kb on + strandat 226.232 kb on - strandat 226.232 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
224,252 + -0.8
224,410 + RR42_RS00940 0.13 -2.1
224,410 + RR42_RS00940 0.13 -2.1
224,810 - RR42_RS00940 0.51 -1.4
224,812 + RR42_RS00940 0.52 -4.1
224,812 + RR42_RS00940 0.52 -3.1
224,813 - RR42_RS00940 0.52 -0.3
224,813 - RR42_RS00940 0.52 -2.4
224,813 - RR42_RS00940 0.52 -2.0
224,829 + RR42_RS00940 0.53 -1.6
224,845 + RR42_RS00940 0.55 -2.3
224,846 - RR42_RS00940 0.55 -3.8
224,846 - RR42_RS00940 0.55 -4.4
224,872 + RR42_RS00940 0.57 -1.7
224,873 - RR42_RS00940 0.57 -3.0
224,873 - RR42_RS00940 0.57 -0.4
224,873 - RR42_RS00940 0.57 -2.3
225,220 + -0.5
225,307 + +0.2
225,308 - -0.3
225,509 + -0.1
225,509 + -0.4
225,619 - -0.6
225,789 + +0.3
225,789 + -1.4
225,789 + +0.4
225,789 + -0.3
225,790 - +1.0
225,790 - +0.3
225,853 - +2.7
226,163 + +1.0
226,220 + +0.3
226,221 - -0.6
226,231 + -0.3
226,231 + +0.0
226,231 + -0.3
226,231 + +0.4
226,232 - -1.2
226,232 - +1.0

Or see this region's nucleotide sequence