Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00800 and RR42_RS00805 are separated by 278 nucleotides RR42_RS00805 and RR42_RS00810 are separated by 89 nucleotides RR42_RS00810 and RR42_RS00815 are separated by 134 nucleotides RR42_RS00815 and RR42_RS00820 are separated by 313 nucleotides RR42_RS00820 and RR42_RS00825 are separated by 260 nucleotides
RR42_RS00800: RR42_RS00800 - histidine kinase, at 197,888 to 199,342
_RS00800
RR42_RS00805: RR42_RS00805 - membrane protein, at 199,621 to 199,794
_RS00805
RR42_RS00810: RR42_RS00810 - membrane protein, at 199,884 to 200,045
_RS00810
RR42_RS00815: RR42_RS00815 - hypothetical protein, at 200,180 to 200,596
_RS00815
RR42_RS00820: RR42_RS00820 - hypothetical protein, at 200,910 to 201,233
_RS00820
RR42_RS00825: RR42_RS00825 - arginyl-tRNA synthetase, at 201,494 to 203,287
_RS00825
Position (kb) 200
201 Strain fitness (log2 ratio) -1
0
1
2 at 199.203 kb on - strand at 199.228 kb on + strand at 199.228 kb on + strand at 199.228 kb on + strand at 199.229 kb on - strand at 199.229 kb on - strand at 199.229 kb on - strand at 199.230 kb on + strand at 199.230 kb on + strand at 199.231 kb on - strand at 199.231 kb on - strand at 199.285 kb on + strand at 199.554 kb on + strand at 199.686 kb on + strand, within RR42_RS00805 at 199.686 kb on + strand, within RR42_RS00805 at 199.687 kb on - strand, within RR42_RS00805 at 199.687 kb on - strand, within RR42_RS00805 at 199.792 kb on + strand at 199.793 kb on - strand at 199.894 kb on - strand at 199.933 kb on + strand, within RR42_RS00810 at 200.174 kb on - strand at 200.419 kb on + strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.420 kb on - strand, within RR42_RS00815 at 200.471 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.527 kb on + strand, within RR42_RS00815 at 200.648 kb on + strand at 200.672 kb on - strand at 200.839 kb on - strand at 200.865 kb on + strand at 200.876 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.882 kb on - strand at 200.889 kb on + strand at 200.911 kb on + strand at 200.912 kb on - strand at 200.912 kb on - strand at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.090 kb on + strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.091 kb on - strand, within RR42_RS00820 at 201.093 kb on - strand, within RR42_RS00820 at 201.237 kb on - strand at 201.237 kb on - strand at 201.237 kb on - strand at 201.237 kb on - strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.264 kb on + strand at 201.265 kb on - strand at 201.265 kb on - strand at 201.265 kb on - strand at 201.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 199,203 - -0.4 199,228 + +0.8 199,228 + -0.4 199,228 + -0.1 199,229 - +0.2 199,229 - +0.2 199,229 - +2.2 199,230 + +0.9 199,230 + -0.1 199,231 - -0.4 199,231 - +1.2 199,285 + +0.2 199,554 + +0.4 199,686 + RR42_RS00805 0.37 -0.6 199,686 + RR42_RS00805 0.37 -0.6 199,687 - RR42_RS00805 0.38 -0.2 199,687 - RR42_RS00805 0.38 +0.1 199,792 + +1.6 199,793 - +0.2 199,894 - +0.2 199,933 + RR42_RS00810 0.30 +0.8 200,174 - -0.2 200,419 + RR42_RS00815 0.57 -0.8 200,420 - RR42_RS00815 0.58 +0.7 200,420 - RR42_RS00815 0.58 +0.8 200,420 - RR42_RS00815 0.58 +1.3 200,471 + RR42_RS00815 0.70 +0.4 200,527 + RR42_RS00815 0.83 +0.9 200,527 + RR42_RS00815 0.83 +0.9 200,527 + RR42_RS00815 0.83 -0.2 200,648 + +0.2 200,672 - -0.2 200,839 - -0.2 200,865 + +0.7 200,876 + +1.0 200,881 + +1.9 200,881 + -1.4 200,881 + -0.7 200,882 - +0.1 200,889 + +0.0 200,911 + -0.3 200,912 - +1.5 200,912 - +0.4 201,090 + RR42_RS00820 0.56 +0.6 201,090 + RR42_RS00820 0.56 +0.6 201,090 + RR42_RS00820 0.56 +0.7 201,090 + RR42_RS00820 0.56 +0.2 201,090 + RR42_RS00820 0.56 +1.3 201,090 + RR42_RS00820 0.56 -0.5 201,091 - RR42_RS00820 0.56 -0.2 201,091 - RR42_RS00820 0.56 +0.5 201,091 - RR42_RS00820 0.56 -0.4 201,091 - RR42_RS00820 0.56 -0.1 201,091 - RR42_RS00820 0.56 +0.1 201,093 - RR42_RS00820 0.56 +0.3 201,237 - -0.7 201,237 - -0.8 201,237 - -0.1 201,237 - +0.4 201,264 + -0.3 201,264 + +0.1 201,264 + -0.3 201,264 + -0.1 201,264 + -0.4 201,264 + +0.0 201,265 - +0.6 201,265 - +0.1 201,265 - -0.8 201,367 + -0.6
Or see this region's nucleotide sequence