Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23505

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS23500 and RALBFv3_RS23505 are separated by 38 nucleotidesRALBFv3_RS23505 and RALBFv3_RS23510 are separated by 59 nucleotides RALBFv3_RS23500: RALBFv3_RS23500 - xylose ABC transporter ATP-binding protein, at 2,051,773 to 2,053,317 _RS23500 RALBFv3_RS23505: RALBFv3_RS23505 - D-xylose ABC transporter substrate-binding protein, at 2,053,356 to 2,054,375 _RS23505 RALBFv3_RS23510: RALBFv3_RS23510 - porin, at 2,054,435 to 2,055,805 _RS23510 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -1 0 1at 2052.878 kb on + strand, within RALBFv3_RS23500at 2052.878 kb on + strand, within RALBFv3_RS23500at 2052.878 kb on + strand, within RALBFv3_RS23500at 2053.136 kb on + strand, within RALBFv3_RS23500at 2053.384 kb on + strandat 2053.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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2,052,878 + RALBFv3_RS23500 0.72 -0.9
2,052,878 + RALBFv3_RS23500 0.72 -1.0
2,052,878 + RALBFv3_RS23500 0.72 +0.7
2,053,136 + RALBFv3_RS23500 0.88 +0.5
2,053,384 + +1.0
2,053,384 + +0.1

Or see this region's nucleotide sequence