Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS22360

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS22355 and RALBFv3_RS22360 overlap by 1 nucleotidesRALBFv3_RS22360 and RALBFv3_RS22365 overlap by 1 nucleotidesRALBFv3_RS22365 and RALBFv3_RS22370 are separated by 30 nucleotides RALBFv3_RS22355: RALBFv3_RS22355 - penicillin-binding protein, at 1,770,148 to 1,771,719 _RS22355 RALBFv3_RS22360: RALBFv3_RS22360 - hypothetical protein, at 1,771,719 to 1,772,291 _RS22360 RALBFv3_RS22365: RALBFv3_RS22365 - hypothetical protein, at 1,772,291 to 1,773,184 _RS22365 RALBFv3_RS22370: RALBFv3_RS22370 - DUF393 domain-containing protein, at 1,773,215 to 1,773,667 _RS22370 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -2 -1 0 1 2at 1771.012 kb on - strand, within RALBFv3_RS22355at 1771.012 kb on - strand, within RALBFv3_RS22355at 1771.012 kb on - strand, within RALBFv3_RS22355at 1771.072 kb on + strand, within RALBFv3_RS22355at 1771.072 kb on + strand, within RALBFv3_RS22355at 1771.073 kb on - strand, within RALBFv3_RS22355at 1771.073 kb on - strand, within RALBFv3_RS22355at 1771.073 kb on - strand, within RALBFv3_RS22355at 1771.076 kb on + strand, within RALBFv3_RS22355at 1771.076 kb on + strand, within RALBFv3_RS22355at 1771.076 kb on + strand, within RALBFv3_RS22355at 1771.077 kb on - strand, within RALBFv3_RS22355at 1771.077 kb on - strand, within RALBFv3_RS22355at 1771.077 kb on - strand, within RALBFv3_RS22355at 1771.077 kb on - strand, within RALBFv3_RS22355at 1771.077 kb on - strand, within RALBFv3_RS22355at 1771.146 kb on + strand, within RALBFv3_RS22355at 1771.147 kb on - strand, within RALBFv3_RS22355at 1771.147 kb on - strand, within RALBFv3_RS22355at 1771.147 kb on - strand, within RALBFv3_RS22355at 1771.262 kb on + strand, within RALBFv3_RS22355at 1771.262 kb on + strand, within RALBFv3_RS22355at 1771.263 kb on - strand, within RALBFv3_RS22355at 1771.263 kb on - strand, within RALBFv3_RS22355at 1771.263 kb on - strand, within RALBFv3_RS22355at 1771.266 kb on + strand, within RALBFv3_RS22355at 1771.267 kb on - strand, within RALBFv3_RS22355at 1771.267 kb on - strand, within RALBFv3_RS22355at 1771.267 kb on - strand, within RALBFv3_RS22355at 1771.341 kb on + strand, within RALBFv3_RS22355at 1771.342 kb on - strand, within RALBFv3_RS22355at 1771.353 kb on - strand, within RALBFv3_RS22355at 1771.457 kb on + strand, within RALBFv3_RS22355at 1771.498 kb on + strand, within RALBFv3_RS22355at 1771.498 kb on + strand, within RALBFv3_RS22355at 1771.498 kb on + strand, within RALBFv3_RS22355at 1771.498 kb on + strand, within RALBFv3_RS22355at 1771.498 kb on + strand, within RALBFv3_RS22355at 1771.499 kb on - strand, within RALBFv3_RS22355at 1771.499 kb on - strand, within RALBFv3_RS22355at 1771.499 kb on - strand, within RALBFv3_RS22355at 1771.556 kb on + strand, within RALBFv3_RS22355at 1771.556 kb on + strand, within RALBFv3_RS22355at 1771.557 kb on - strand, within RALBFv3_RS22355at 1771.557 kb on - strand, within RALBFv3_RS22355at 1771.557 kb on - strand, within RALBFv3_RS22355at 1771.557 kb on - strand, within RALBFv3_RS22355at 1771.561 kb on + strand, within RALBFv3_RS22355at 1771.561 kb on + strand, within RALBFv3_RS22355at 1771.561 kb on + strand, within RALBFv3_RS22355at 1771.562 kb on - strandat 1771.714 kb on + strandat 1771.714 kb on + strandat 1771.715 kb on - strandat 1771.742 kb on - strandat 1771.833 kb on - strand, within RALBFv3_RS22360at 1771.834 kb on - strand, within RALBFv3_RS22360at 1771.987 kb on - strand, within RALBFv3_RS22360at 1771.987 kb on - strand, within RALBFv3_RS22360at 1772.040 kb on + strand, within RALBFv3_RS22360at 1772.040 kb on + strand, within RALBFv3_RS22360at 1772.040 kb on + strand, within RALBFv3_RS22360at 1772.040 kb on + strand, within RALBFv3_RS22360at 1772.097 kb on + strand, within RALBFv3_RS22360at 1772.098 kb on - strand, within RALBFv3_RS22360at 1772.098 kb on - strand, within RALBFv3_RS22360at 1772.149 kb on - strand, within RALBFv3_RS22360at 1772.208 kb on + strand, within RALBFv3_RS22360at 1772.208 kb on + strand, within RALBFv3_RS22360at 1772.208 kb on + strand, within RALBFv3_RS22360at 1772.208 kb on + strand, within RALBFv3_RS22360at 1772.208 kb on + strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.209 kb on - strand, within RALBFv3_RS22360at 1772.296 kb on + strandat 1772.352 kb on - strandat 1772.397 kb on + strand, within RALBFv3_RS22365at 1772.397 kb on + strand, within RALBFv3_RS22365at 1772.397 kb on + strand, within RALBFv3_RS22365at 1772.398 kb on - strand, within RALBFv3_RS22365at 1772.398 kb on - strand, within RALBFv3_RS22365at 1772.398 kb on - strand, within RALBFv3_RS22365at 1772.398 kb on - strand, within RALBFv3_RS22365at 1772.409 kb on - strand, within RALBFv3_RS22365at 1772.430 kb on + strand, within RALBFv3_RS22365at 1772.431 kb on - strand, within RALBFv3_RS22365at 1772.432 kb on + strand, within RALBFv3_RS22365at 1772.432 kb on + strand, within RALBFv3_RS22365at 1772.432 kb on + strand, within RALBFv3_RS22365at 1772.432 kb on + strand, within RALBFv3_RS22365at 1772.432 kb on + strand, within RALBFv3_RS22365at 1772.433 kb on - strand, within RALBFv3_RS22365at 1772.433 kb on - strand, within RALBFv3_RS22365at 1772.437 kb on - strand, within RALBFv3_RS22365at 1772.437 kb on - strand, within RALBFv3_RS22365at 1772.468 kb on + strand, within RALBFv3_RS22365at 1772.510 kb on + strand, within RALBFv3_RS22365at 1772.510 kb on + strand, within RALBFv3_RS22365at 1772.559 kb on + strand, within RALBFv3_RS22365at 1772.559 kb on + strand, within RALBFv3_RS22365at 1772.578 kb on - strand, within RALBFv3_RS22365at 1772.578 kb on - strand, within RALBFv3_RS22365at 1772.583 kb on + strand, within RALBFv3_RS22365at 1772.584 kb on - strand, within RALBFv3_RS22365at 1772.584 kb on - strand, within RALBFv3_RS22365at 1772.610 kb on + strand, within RALBFv3_RS22365at 1772.654 kb on + strand, within RALBFv3_RS22365at 1772.655 kb on - strand, within RALBFv3_RS22365at 1772.710 kb on + strand, within RALBFv3_RS22365at 1772.710 kb on + strand, within RALBFv3_RS22365at 1772.711 kb on - strand, within RALBFv3_RS22365at 1772.748 kb on + strand, within RALBFv3_RS22365at 1772.786 kb on - strand, within RALBFv3_RS22365at 1772.837 kb on + strand, within RALBFv3_RS22365at 1772.837 kb on + strand, within RALBFv3_RS22365at 1772.838 kb on - strand, within RALBFv3_RS22365at 1772.838 kb on - strand, within RALBFv3_RS22365at 1772.838 kb on - strand, within RALBFv3_RS22365at 1772.852 kb on + strand, within RALBFv3_RS22365at 1772.852 kb on + strand, within RALBFv3_RS22365at 1772.853 kb on - strand, within RALBFv3_RS22365at 1772.853 kb on - strand, within RALBFv3_RS22365at 1772.898 kb on - strand, within RALBFv3_RS22365at 1772.912 kb on - strand, within RALBFv3_RS22365at 1772.914 kb on + strand, within RALBFv3_RS22365at 1772.914 kb on + strand, within RALBFv3_RS22365at 1772.914 kb on + strand, within RALBFv3_RS22365at 1772.915 kb on - strand, within RALBFv3_RS22365at 1772.915 kb on - strand, within RALBFv3_RS22365at 1772.915 kb on - strand, within RALBFv3_RS22365at 1772.922 kb on - strand, within RALBFv3_RS22365at 1772.922 kb on - strand, within RALBFv3_RS22365at 1773.088 kb on - strand, within RALBFv3_RS22365at 1773.116 kb on + strandat 1773.182 kb on + strandat 1773.182 kb on + strandat 1773.182 kb on + strandat 1773.182 kb on + strandat 1773.182 kb on + strandat 1773.182 kb on + strandat 1773.183 kb on - strandat 1773.183 kb on - strandat 1773.183 kb on - strandat 1773.183 kb on - strandat 1773.191 kb on + strandat 1773.192 kb on + strandat 1773.192 kb on + strandat 1773.193 kb on - strandat 1773.193 kb on - strandat 1773.222 kb on + strandat 1773.222 kb on + strandat 1773.222 kb on + strandat 1773.222 kb on + strandat 1773.223 kb on - strandat 1773.225 kb on + strandat 1773.285 kb on + strand, within RALBFv3_RS22370at 1773.286 kb on - strand, within RALBFv3_RS22370at 1773.286 kb on - strand, within RALBFv3_RS22370

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,771,012 - RALBFv3_RS22355 0.55 -0.5
1,771,012 - RALBFv3_RS22355 0.55 -0.9
1,771,012 - RALBFv3_RS22355 0.55 -0.1
1,771,072 + RALBFv3_RS22355 0.59 -0.3
1,771,072 + RALBFv3_RS22355 0.59 +0.5
1,771,073 - RALBFv3_RS22355 0.59 -0.4
1,771,073 - RALBFv3_RS22355 0.59 -1.2
1,771,073 - RALBFv3_RS22355 0.59 +0.9
1,771,076 + RALBFv3_RS22355 0.59 -1.9
1,771,076 + RALBFv3_RS22355 0.59 +0.4
1,771,076 + RALBFv3_RS22355 0.59 +0.1
1,771,077 - RALBFv3_RS22355 0.59 +0.3
1,771,077 - RALBFv3_RS22355 0.59 +0.8
1,771,077 - RALBFv3_RS22355 0.59 -0.8
1,771,077 - RALBFv3_RS22355 0.59 -0.2
1,771,077 - RALBFv3_RS22355 0.59 -1.7
1,771,146 + RALBFv3_RS22355 0.63 -1.6
1,771,147 - RALBFv3_RS22355 0.64 -0.3
1,771,147 - RALBFv3_RS22355 0.64 +1.8
1,771,147 - RALBFv3_RS22355 0.64 +0.6
1,771,262 + RALBFv3_RS22355 0.71 -0.2
1,771,262 + RALBFv3_RS22355 0.71 +0.7
1,771,263 - RALBFv3_RS22355 0.71 -0.5
1,771,263 - RALBFv3_RS22355 0.71 -0.2
1,771,263 - RALBFv3_RS22355 0.71 +1.3
1,771,266 + RALBFv3_RS22355 0.71 +1.9
1,771,267 - RALBFv3_RS22355 0.71 -0.6
1,771,267 - RALBFv3_RS22355 0.71 +0.2
1,771,267 - RALBFv3_RS22355 0.71 -0.2
1,771,341 + RALBFv3_RS22355 0.76 -0.3
1,771,342 - RALBFv3_RS22355 0.76 +0.9
1,771,353 - RALBFv3_RS22355 0.77 -0.9
1,771,457 + RALBFv3_RS22355 0.83 +0.6
1,771,498 + RALBFv3_RS22355 0.86 -0.4
1,771,498 + RALBFv3_RS22355 0.86 +0.8
1,771,498 + RALBFv3_RS22355 0.86 -0.2
1,771,498 + RALBFv3_RS22355 0.86 -0.3
1,771,498 + RALBFv3_RS22355 0.86 -0.3
1,771,499 - RALBFv3_RS22355 0.86 +0.3
1,771,499 - RALBFv3_RS22355 0.86 +2.2
1,771,499 - RALBFv3_RS22355 0.86 +1.2
1,771,556 + RALBFv3_RS22355 0.90 +1.1
1,771,556 + RALBFv3_RS22355 0.90 -0.3
1,771,557 - RALBFv3_RS22355 0.90 +1.0
1,771,557 - RALBFv3_RS22355 0.90 -0.8
1,771,557 - RALBFv3_RS22355 0.90 -0.2
1,771,557 - RALBFv3_RS22355 0.90 -0.7
1,771,561 + RALBFv3_RS22355 0.90 +0.3
1,771,561 + RALBFv3_RS22355 0.90 +0.7
1,771,561 + RALBFv3_RS22355 0.90 +0.6
1,771,562 - +0.3
1,771,714 + +1.4
1,771,714 + -1.7
1,771,715 - -0.8
1,771,742 - +0.1
1,771,833 - RALBFv3_RS22360 0.20 +0.8
1,771,834 - RALBFv3_RS22360 0.20 -0.5
1,771,987 - RALBFv3_RS22360 0.47 -1.2
1,771,987 - RALBFv3_RS22360 0.47 -2.3
1,772,040 + RALBFv3_RS22360 0.56 +0.1
1,772,040 + RALBFv3_RS22360 0.56 -0.1
1,772,040 + RALBFv3_RS22360 0.56 +0.9
1,772,040 + RALBFv3_RS22360 0.56 +0.7
1,772,097 + RALBFv3_RS22360 0.66 -1.0
1,772,098 - RALBFv3_RS22360 0.66 +0.1
1,772,098 - RALBFv3_RS22360 0.66 +0.2
1,772,149 - RALBFv3_RS22360 0.75 -0.0
1,772,208 + RALBFv3_RS22360 0.85 +0.0
1,772,208 + RALBFv3_RS22360 0.85 -0.1
1,772,208 + RALBFv3_RS22360 0.85 +1.0
1,772,208 + RALBFv3_RS22360 0.85 -1.1
1,772,208 + RALBFv3_RS22360 0.85 -0.7
1,772,209 - RALBFv3_RS22360 0.86 -0.3
1,772,209 - RALBFv3_RS22360 0.86 -0.4
1,772,209 - RALBFv3_RS22360 0.86 +0.1
1,772,209 - RALBFv3_RS22360 0.86 +2.3
1,772,209 - RALBFv3_RS22360 0.86 -0.3
1,772,209 - RALBFv3_RS22360 0.86 +0.7
1,772,209 - RALBFv3_RS22360 0.86 -0.5
1,772,209 - RALBFv3_RS22360 0.86 -0.4
1,772,296 + -0.1
1,772,352 - -0.3
1,772,397 + RALBFv3_RS22365 0.12 +0.4
1,772,397 + RALBFv3_RS22365 0.12 -0.6
1,772,397 + RALBFv3_RS22365 0.12 +1.5
1,772,398 - RALBFv3_RS22365 0.12 +0.2
1,772,398 - RALBFv3_RS22365 0.12 -0.3
1,772,398 - RALBFv3_RS22365 0.12 -0.3
1,772,398 - RALBFv3_RS22365 0.12 +0.7
1,772,409 - RALBFv3_RS22365 0.13 +1.1
1,772,430 + RALBFv3_RS22365 0.16 -1.7
1,772,431 - RALBFv3_RS22365 0.16 +0.1
1,772,432 + RALBFv3_RS22365 0.16 -1.1
1,772,432 + RALBFv3_RS22365 0.16 +0.3
1,772,432 + RALBFv3_RS22365 0.16 -0.4
1,772,432 + RALBFv3_RS22365 0.16 +0.2
1,772,432 + RALBFv3_RS22365 0.16 -0.7
1,772,433 - RALBFv3_RS22365 0.16 +1.0
1,772,433 - RALBFv3_RS22365 0.16 -0.8
1,772,437 - RALBFv3_RS22365 0.16 -0.0
1,772,437 - RALBFv3_RS22365 0.16 -0.7
1,772,468 + RALBFv3_RS22365 0.20 -0.9
1,772,510 + RALBFv3_RS22365 0.24 -0.5
1,772,510 + RALBFv3_RS22365 0.24 +0.7
1,772,559 + RALBFv3_RS22365 0.30 -0.7
1,772,559 + RALBFv3_RS22365 0.30 +0.9
1,772,578 - RALBFv3_RS22365 0.32 -0.5
1,772,578 - RALBFv3_RS22365 0.32 -0.3
1,772,583 + RALBFv3_RS22365 0.33 -0.1
1,772,584 - RALBFv3_RS22365 0.33 -0.1
1,772,584 - RALBFv3_RS22365 0.33 -0.2
1,772,610 + RALBFv3_RS22365 0.36 -0.2
1,772,654 + RALBFv3_RS22365 0.41 +0.0
1,772,655 - RALBFv3_RS22365 0.41 -0.2
1,772,710 + RALBFv3_RS22365 0.47 +0.1
1,772,710 + RALBFv3_RS22365 0.47 +1.0
1,772,711 - RALBFv3_RS22365 0.47 -0.2
1,772,748 + RALBFv3_RS22365 0.51 -1.5
1,772,786 - RALBFv3_RS22365 0.55 -0.0
1,772,837 + RALBFv3_RS22365 0.61 +0.5
1,772,837 + RALBFv3_RS22365 0.61 -0.7
1,772,838 - RALBFv3_RS22365 0.61 -0.6
1,772,838 - RALBFv3_RS22365 0.61 -0.3
1,772,838 - RALBFv3_RS22365 0.61 -0.3
1,772,852 + RALBFv3_RS22365 0.63 -0.2
1,772,852 + RALBFv3_RS22365 0.63 -0.5
1,772,853 - RALBFv3_RS22365 0.63 +0.1
1,772,853 - RALBFv3_RS22365 0.63 +0.2
1,772,898 - RALBFv3_RS22365 0.68 -1.2
1,772,912 - RALBFv3_RS22365 0.69 -1.4
1,772,914 + RALBFv3_RS22365 0.70 -0.1
1,772,914 + RALBFv3_RS22365 0.70 -0.0
1,772,914 + RALBFv3_RS22365 0.70 +0.4
1,772,915 - RALBFv3_RS22365 0.70 +0.2
1,772,915 - RALBFv3_RS22365 0.70 +0.3
1,772,915 - RALBFv3_RS22365 0.70 -1.3
1,772,922 - RALBFv3_RS22365 0.71 +0.5
1,772,922 - RALBFv3_RS22365 0.71 +0.6
1,773,088 - RALBFv3_RS22365 0.89 -0.2
1,773,116 + -0.5
1,773,182 + -0.6
1,773,182 + -0.8
1,773,182 + +0.3
1,773,182 + -0.3
1,773,182 + -0.4
1,773,182 + -1.0
1,773,183 - -0.1
1,773,183 - -1.7
1,773,183 - -0.1
1,773,183 - +0.5
1,773,191 + -1.1
1,773,192 + -0.4
1,773,192 + +0.9
1,773,193 - -2.4
1,773,193 - +0.9
1,773,222 + +1.0
1,773,222 + -1.1
1,773,222 + +0.3
1,773,222 + -0.5
1,773,223 - +0.4
1,773,225 + -0.2
1,773,285 + RALBFv3_RS22370 0.15 -0.6
1,773,286 - RALBFv3_RS22370 0.16 -1.0
1,773,286 - RALBFv3_RS22370 0.16 +0.1

Or see this region's nucleotide sequence