Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19930

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19925 and RALBFv3_RS19930 are separated by 144 nucleotidesRALBFv3_RS19930 and RALBFv3_RS19935 are separated by 184 nucleotides RALBFv3_RS19925: RALBFv3_RS19925 - hypothetical protein, at 1,157,826 to 1,158,773 _RS19925 RALBFv3_RS19930: RALBFv3_RS19930 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,158,918 to 1,159,853 _RS19930 RALBFv3_RS19935: RALBFv3_RS19935 - LysR family transcriptional regulator, at 1,160,038 to 1,160,925 _RS19935 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -1 0 1 2 3 4at 1158.108 kb on - strand, within RALBFv3_RS19925at 1159.249 kb on + strand, within RALBFv3_RS19930at 1159.249 kb on + strand, within RALBFv3_RS19930at 1159.250 kb on - strand, within RALBFv3_RS19930at 1159.372 kb on + strand, within RALBFv3_RS19930at 1159.372 kb on + strand, within RALBFv3_RS19930at 1159.373 kb on - strand, within RALBFv3_RS19930at 1159.406 kb on - strand, within RALBFv3_RS19930at 1159.573 kb on + strand, within RALBFv3_RS19930at 1160.001 kb on + strandat 1160.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,158,108 - RALBFv3_RS19925 0.30 +4.0
1,159,249 + RALBFv3_RS19930 0.35 -0.6
1,159,249 + RALBFv3_RS19930 0.35 -0.8
1,159,250 - RALBFv3_RS19930 0.35 -0.4
1,159,372 + RALBFv3_RS19930 0.49 +0.6
1,159,372 + RALBFv3_RS19930 0.49 -1.4
1,159,373 - RALBFv3_RS19930 0.49 +0.2
1,159,406 - RALBFv3_RS19930 0.52 +0.7
1,159,573 + RALBFv3_RS19930 0.70 -1.3
1,160,001 + -0.0
1,160,002 - -0.3

Or see this region's nucleotide sequence