Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19315 and RALBFv3_RS19320 are separated by 194 nucleotides RALBFv3_RS19320 and RALBFv3_RS19325 are separated by 2 nucleotides RALBFv3_RS19325 and RALBFv3_RS19330 are separated by 9 nucleotides
RALBFv3_RS19315: RALBFv3_RS19315 - hypothetical protein, at 929,131 to 929,490
_RS19315
RALBFv3_RS19320: RALBFv3_RS19320 - enoyl-[acyl-carrier-protein] reductase FabI, at 929,685 to 930,467
_RS19320
RALBFv3_RS19325: RALBFv3_RS19325 - acetate/propionate family kinase, at 930,470 to 931,648
_RS19325
RALBFv3_RS19330: RALBFv3_RS19330 - phosphate acetyltransferase, at 931,658 to 932,599
_RS19330
Position (kb) 930
931
932 Strain fitness (log2 ratio) -1
0
1
2 at 929.562 kb on + strand at 929.571 kb on + strand at 929.990 kb on - strand, within RALBFv3_RS19320 at 930.019 kb on + strand, within RALBFv3_RS19320 at 930.337 kb on + strand, within RALBFv3_RS19320 at 930.657 kb on + strand, within RALBFv3_RS19325 at 930.680 kb on + strand, within RALBFv3_RS19325 at 930.787 kb on + strand, within RALBFv3_RS19325 at 930.846 kb on + strand, within RALBFv3_RS19325 at 930.846 kb on + strand, within RALBFv3_RS19325 at 930.847 kb on - strand, within RALBFv3_RS19325 at 930.934 kb on + strand, within RALBFv3_RS19325 at 930.961 kb on + strand, within RALBFv3_RS19325 at 931.092 kb on + strand, within RALBFv3_RS19325 at 931.334 kb on - strand, within RALBFv3_RS19325 at 931.483 kb on + strand, within RALBFv3_RS19325 at 931.520 kb on - strand, within RALBFv3_RS19325 at 931.536 kb on + strand at 931.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 929,562 + +0.7 929,571 + -0.7 929,990 - RALBFv3_RS19320 0.39 -0.2 930,019 + RALBFv3_RS19320 0.43 +1.6 930,337 + RALBFv3_RS19320 0.83 +0.0 930,657 + RALBFv3_RS19325 0.16 -0.4 930,680 + RALBFv3_RS19325 0.18 -1.0 930,787 + RALBFv3_RS19325 0.27 -0.2 930,846 + RALBFv3_RS19325 0.32 +0.2 930,846 + RALBFv3_RS19325 0.32 +1.2 930,847 - RALBFv3_RS19325 0.32 -0.1 930,934 + RALBFv3_RS19325 0.39 -0.2 930,961 + RALBFv3_RS19325 0.42 -0.9 931,092 + RALBFv3_RS19325 0.53 +2.3 931,334 - RALBFv3_RS19325 0.73 +0.9 931,483 + RALBFv3_RS19325 0.86 +0.7 931,520 - RALBFv3_RS19325 0.89 -0.0 931,536 + +0.4 931,537 - -0.4
Or see this region's nucleotide sequence