Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18800 and RALBFv3_RS18805 overlap by 4 nucleotides RALBFv3_RS18805 and RALBFv3_RS18810 overlap by 14 nucleotides RALBFv3_RS18810 and RALBFv3_RS18815 are separated by 21 nucleotides RALBFv3_RS18815 and RALBFv3_RS18820 are separated by 502 nucleotides
RALBFv3_RS18800: RALBFv3_RS18800 - DoxX family protein, at 764,664 to 765,152
_RS18800
RALBFv3_RS18805: RALBFv3_RS18805 - DUF2063 domain-containing protein, at 765,149 to 765,919
_RS18805
RALBFv3_RS18810: RALBFv3_RS18810 - DUF692 domain-containing protein, at 765,906 to 766,784
_RS18810
RALBFv3_RS18815: RALBFv3_RS18815 - DUF2282 domain-containing protein, at 766,806 to 767,075
_RS18815
RALBFv3_RS18820: RALBFv3_RS18820 - DNA-binding protein, at 767,578 to 767,829
_RS18820
Position (kb) 765
766
767 Strain fitness (log2 ratio) -1
0
1
2 at 764.962 kb on + strand, within RALBFv3_RS18800 at 764.963 kb on - strand, within RALBFv3_RS18800 at 765.034 kb on + strand, within RALBFv3_RS18800 at 765.034 kb on + strand, within RALBFv3_RS18800 at 765.035 kb on - strand, within RALBFv3_RS18800 at 765.035 kb on - strand, within RALBFv3_RS18800 at 765.035 kb on - strand, within RALBFv3_RS18800 at 765.210 kb on + strand at 765.582 kb on + strand, within RALBFv3_RS18805 at 765.630 kb on + strand, within RALBFv3_RS18805 at 765.631 kb on - strand, within RALBFv3_RS18805 at 765.730 kb on + strand, within RALBFv3_RS18805 at 766.060 kb on + strand, within RALBFv3_RS18810 at 766.061 kb on - strand, within RALBFv3_RS18810 at 766.069 kb on + strand, within RALBFv3_RS18810 at 766.069 kb on + strand, within RALBFv3_RS18810 at 766.069 kb on + strand, within RALBFv3_RS18810 at 766.069 kb on + strand, within RALBFv3_RS18810 at 766.069 kb on + strand, within RALBFv3_RS18810 at 766.070 kb on - strand, within RALBFv3_RS18810 at 766.070 kb on - strand, within RALBFv3_RS18810 at 766.139 kb on - strand, within RALBFv3_RS18810 at 766.343 kb on - strand, within RALBFv3_RS18810 at 766.343 kb on - strand, within RALBFv3_RS18810 at 766.343 kb on - strand, within RALBFv3_RS18810 at 766.600 kb on - strand at 766.657 kb on + strand, within RALBFv3_RS18810 at 766.663 kb on + strand, within RALBFv3_RS18810 at 766.663 kb on + strand, within RALBFv3_RS18810 at 766.663 kb on + strand, within RALBFv3_RS18810 at 766.664 kb on - strand, within RALBFv3_RS18810 at 766.664 kb on - strand, within RALBFv3_RS18810 at 767.303 kb on + strand at 767.303 kb on + strand at 767.684 kb on + strand, within RALBFv3_RS18820 at 767.685 kb on - strand, within RALBFv3_RS18820 at 767.756 kb on + strand, within RALBFv3_RS18820 at 767.757 kb on - strand, within RALBFv3_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 764,962 + RALBFv3_RS18800 0.61 +1.6 764,963 - RALBFv3_RS18800 0.61 -0.0 765,034 + RALBFv3_RS18800 0.76 +0.7 765,034 + RALBFv3_RS18800 0.76 +0.3 765,035 - RALBFv3_RS18800 0.76 -1.6 765,035 - RALBFv3_RS18800 0.76 -0.6 765,035 - RALBFv3_RS18800 0.76 -0.5 765,210 + -0.1 765,582 + RALBFv3_RS18805 0.56 +0.1 765,630 + RALBFv3_RS18805 0.62 -0.6 765,631 - RALBFv3_RS18805 0.63 +0.7 765,730 + RALBFv3_RS18805 0.75 +0.5 766,060 + RALBFv3_RS18810 0.18 +2.1 766,061 - RALBFv3_RS18810 0.18 -0.5 766,069 + RALBFv3_RS18810 0.19 +0.2 766,069 + RALBFv3_RS18810 0.19 +1.4 766,069 + RALBFv3_RS18810 0.19 +1.7 766,069 + RALBFv3_RS18810 0.19 +0.3 766,069 + RALBFv3_RS18810 0.19 -1.2 766,070 - RALBFv3_RS18810 0.19 +0.7 766,070 - RALBFv3_RS18810 0.19 -0.3 766,139 - RALBFv3_RS18810 0.27 +0.2 766,343 - RALBFv3_RS18810 0.50 +0.1 766,343 - RALBFv3_RS18810 0.50 +0.3 766,343 - RALBFv3_RS18810 0.50 -1.6 766,600 - +0.8 766,657 + RALBFv3_RS18810 0.85 +0.3 766,663 + RALBFv3_RS18810 0.86 -0.7 766,663 + RALBFv3_RS18810 0.86 +1.6 766,663 + RALBFv3_RS18810 0.86 +0.3 766,664 - RALBFv3_RS18810 0.86 +0.7 766,664 - RALBFv3_RS18810 0.86 +0.4 767,303 + -0.3 767,303 + +1.0 767,684 + RALBFv3_RS18820 0.42 -0.3 767,685 - RALBFv3_RS18820 0.42 -0.2 767,756 + RALBFv3_RS18820 0.71 -0.2 767,757 - RALBFv3_RS18820 0.71 -0.3
Or see this region's nucleotide sequence