Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS24280 and RALBFv3_RS24285 are separated by 111 nucleotides RALBFv3_RS24285 and RALBFv3_RS17725 overlap by 16 nucleotides RALBFv3_RS17725 and RALBFv3_RS17730 are separated by 131 nucleotides
RALBFv3_RS24280: RALBFv3_RS24280 - TonB-dependent receptor, at 478,313 to 479,191
_RS24280
RALBFv3_RS24285: RALBFv3_RS24285 - hypothetical protein, at 479,303 to 479,791
_RS24285
RALBFv3_RS17725: RALBFv3_RS17725 - sulfite exporter TauE/SafE family protein, at 479,776 to 480,534
_RS17725
RALBFv3_RS17730: RALBFv3_RS17730 - LysR family transcriptional regulator, at 480,666 to 481,550
_RS17730
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.859 kb on + strand, within RALBFv3_RS24280 at 478.859 kb on + strand, within RALBFv3_RS24280 at 478.860 kb on - strand, within RALBFv3_RS24280 at 479.031 kb on - strand, within RALBFv3_RS24280 at 479.268 kb on + strand at 479.269 kb on - strand at 479.270 kb on + strand at 479.891 kb on + strand, within RALBFv3_RS17725 at 480.099 kb on - strand, within RALBFv3_RS17725 at 480.099 kb on - strand, within RALBFv3_RS17725 at 480.189 kb on + strand, within RALBFv3_RS17725 at 480.190 kb on - strand, within RALBFv3_RS17725 at 480.190 kb on - strand, within RALBFv3_RS17725 at 480.351 kb on - strand, within RALBFv3_RS17725 at 480.597 kb on + strand at 480.597 kb on + strand at 480.598 kb on - strand at 480.598 kb on - strand at 480.925 kb on - strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.059 kb on + strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.060 kb on - strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.278 kb on + strand, within RALBFv3_RS17730 at 481.279 kb on - strand, within RALBFv3_RS17730 at 481.321 kb on - strand, within RALBFv3_RS17730 at 481.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 478,859 + RALBFv3_RS24280 0.62 -0.7 478,859 + RALBFv3_RS24280 0.62 +1.5 478,860 - RALBFv3_RS24280 0.62 +0.5 479,031 - RALBFv3_RS24280 0.82 +1.1 479,268 + -0.5 479,269 - -3.1 479,270 + +1.8 479,891 + RALBFv3_RS17725 0.15 +1.0 480,099 - RALBFv3_RS17725 0.43 -0.0 480,099 - RALBFv3_RS17725 0.43 +0.2 480,189 + RALBFv3_RS17725 0.54 +1.5 480,190 - RALBFv3_RS17725 0.55 -0.6 480,190 - RALBFv3_RS17725 0.55 -0.8 480,351 - RALBFv3_RS17725 0.76 +0.5 480,597 + +0.2 480,597 + +1.0 480,598 - +1.1 480,598 - -1.4 480,925 - RALBFv3_RS17730 0.29 -0.2 481,059 + RALBFv3_RS17730 0.44 +0.3 481,059 + RALBFv3_RS17730 0.44 +0.2 481,059 + RALBFv3_RS17730 0.44 +0.5 481,060 - RALBFv3_RS17730 0.45 -0.6 481,060 - RALBFv3_RS17730 0.45 +0.2 481,060 - RALBFv3_RS17730 0.45 +0.6 481,278 + RALBFv3_RS17730 0.69 +0.7 481,278 + RALBFv3_RS17730 0.69 +0.1 481,278 + RALBFv3_RS17730 0.69 -0.1 481,279 - RALBFv3_RS17730 0.69 -2.1 481,321 - RALBFv3_RS17730 0.74 +0.6 481,513 - -1.5
Or see this region's nucleotide sequence