Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS17105

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS17100 and RALBFv3_RS17105 are separated by 109 nucleotidesRALBFv3_RS17105 and RALBFv3_RS17110 are separated by 43 nucleotides RALBFv3_RS17100: RALBFv3_RS17100 - hypothetical protein, at 322,981 to 324,057 _RS17100 RALBFv3_RS17105: RALBFv3_RS17105 - metallophosphoesterase, at 324,167 to 325,357 _RS17105 RALBFv3_RS17110: RALBFv3_RS17110 - hypothetical protein, at 325,401 to 327,287 _RS17110 Position (kb) 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2 3at 323.371 kb on + strand, within RALBFv3_RS17100at 323.371 kb on + strand, within RALBFv3_RS17100at 323.379 kb on + strand, within RALBFv3_RS17100at 323.380 kb on - strand, within RALBFv3_RS17100at 323.599 kb on + strand, within RALBFv3_RS17100at 323.600 kb on - strand, within RALBFv3_RS17100at 323.600 kb on - strand, within RALBFv3_RS17100at 323.671 kb on + strand, within RALBFv3_RS17100at 323.672 kb on - strand, within RALBFv3_RS17100at 323.672 kb on - strand, within RALBFv3_RS17100at 323.681 kb on + strand, within RALBFv3_RS17100at 323.681 kb on + strand, within RALBFv3_RS17100at 323.863 kb on + strand, within RALBFv3_RS17100at 323.864 kb on - strand, within RALBFv3_RS17100at 323.864 kb on - strand, within RALBFv3_RS17100at 323.971 kb on + strandat 323.971 kb on + strandat 323.972 kb on - strandat 323.972 kb on - strandat 324.084 kb on - strandat 324.403 kb on - strand, within RALBFv3_RS17105at 324.433 kb on - strand, within RALBFv3_RS17105at 324.433 kb on - strand, within RALBFv3_RS17105at 324.439 kb on - strand, within RALBFv3_RS17105at 324.477 kb on + strand, within RALBFv3_RS17105at 324.478 kb on - strand, within RALBFv3_RS17105at 324.510 kb on + strand, within RALBFv3_RS17105at 324.511 kb on - strand, within RALBFv3_RS17105at 324.511 kb on - strand, within RALBFv3_RS17105at 324.615 kb on + strand, within RALBFv3_RS17105at 324.616 kb on - strand, within RALBFv3_RS17105at 324.616 kb on - strand, within RALBFv3_RS17105at 324.616 kb on - strand, within RALBFv3_RS17105at 324.616 kb on - strand, within RALBFv3_RS17105at 324.636 kb on + strand, within RALBFv3_RS17105at 324.636 kb on + strand, within RALBFv3_RS17105at 324.636 kb on + strand, within RALBFv3_RS17105at 324.690 kb on + strand, within RALBFv3_RS17105at 324.690 kb on + strand, within RALBFv3_RS17105at 324.690 kb on + strand, within RALBFv3_RS17105at 324.690 kb on + strand, within RALBFv3_RS17105at 324.690 kb on + strand, within RALBFv3_RS17105at 324.691 kb on - strand, within RALBFv3_RS17105at 324.691 kb on - strand, within RALBFv3_RS17105at 324.738 kb on + strand, within RALBFv3_RS17105at 324.738 kb on + strand, within RALBFv3_RS17105at 324.739 kb on - strand, within RALBFv3_RS17105at 324.756 kb on + strand, within RALBFv3_RS17105at 324.756 kb on + strand, within RALBFv3_RS17105at 324.756 kb on + strand, within RALBFv3_RS17105at 324.756 kb on + strand, within RALBFv3_RS17105at 324.757 kb on - strand, within RALBFv3_RS17105at 324.757 kb on - strand, within RALBFv3_RS17105at 324.849 kb on + strand, within RALBFv3_RS17105at 324.849 kb on + strand, within RALBFv3_RS17105at 324.850 kb on - strand, within RALBFv3_RS17105at 324.850 kb on - strand, within RALBFv3_RS17105at 324.852 kb on + strand, within RALBFv3_RS17105at 324.852 kb on + strand, within RALBFv3_RS17105at 324.852 kb on + strand, within RALBFv3_RS17105at 324.852 kb on + strand, within RALBFv3_RS17105at 324.852 kb on + strand, within RALBFv3_RS17105at 324.853 kb on - strand, within RALBFv3_RS17105at 324.853 kb on - strand, within RALBFv3_RS17105at 324.853 kb on - strand, within RALBFv3_RS17105at 324.876 kb on + strand, within RALBFv3_RS17105at 324.876 kb on + strand, within RALBFv3_RS17105at 324.876 kb on + strand, within RALBFv3_RS17105at 324.878 kb on - strand, within RALBFv3_RS17105at 325.320 kb on + strandat 325.320 kb on + strandat 325.321 kb on - strandat 325.402 kb on + strandat 325.404 kb on + strandat 325.404 kb on + strandat 325.404 kb on + strandat 325.404 kb on + strandat 325.404 kb on + strandat 325.404 kb on + strandat 325.405 kb on - strandat 325.417 kb on + strandat 325.418 kb on - strandat 325.418 kb on - strandat 325.418 kb on - strandat 325.418 kb on - strandat 325.588 kb on + strandat 325.589 kb on - strandat 325.589 kb on - strandat 325.661 kb on - strand, within RALBFv3_RS17110at 325.702 kb on + strand, within RALBFv3_RS17110at 325.702 kb on + strand, within RALBFv3_RS17110at 325.702 kb on + strand, within RALBFv3_RS17110at 325.703 kb on - strand, within RALBFv3_RS17110at 325.703 kb on - strand, within RALBFv3_RS17110at 325.703 kb on - strand, within RALBFv3_RS17110at 325.721 kb on - strand, within RALBFv3_RS17110at 326.039 kb on - strand, within RALBFv3_RS17110at 326.054 kb on + strand, within RALBFv3_RS17110at 326.055 kb on - strand, within RALBFv3_RS17110at 326.055 kb on - strand, within RALBFv3_RS17110at 326.083 kb on + strand, within RALBFv3_RS17110at 326.083 kb on + strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.084 kb on - strand, within RALBFv3_RS17110at 326.236 kb on + strand, within RALBFv3_RS17110at 326.236 kb on + strand, within RALBFv3_RS17110at 326.236 kb on + strand, within RALBFv3_RS17110at 326.237 kb on - strand, within RALBFv3_RS17110at 326.237 kb on - strand, within RALBFv3_RS17110at 326.237 kb on - strand, within RALBFv3_RS17110at 326.237 kb on - strand, within RALBFv3_RS17110at 326.323 kb on + strand, within RALBFv3_RS17110at 326.323 kb on + strand, within RALBFv3_RS17110at 326.324 kb on - strand, within RALBFv3_RS17110

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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323,371 + RALBFv3_RS17100 0.36 -1.3
323,371 + RALBFv3_RS17100 0.36 -0.4
323,379 + RALBFv3_RS17100 0.37 -0.5
323,380 - RALBFv3_RS17100 0.37 +1.1
323,599 + RALBFv3_RS17100 0.57 -1.6
323,600 - RALBFv3_RS17100 0.57 -0.4
323,600 - RALBFv3_RS17100 0.57 -0.1
323,671 + RALBFv3_RS17100 0.64 +1.1
323,672 - RALBFv3_RS17100 0.64 -0.5
323,672 - RALBFv3_RS17100 0.64 -0.7
323,681 + RALBFv3_RS17100 0.65 -0.9
323,681 + RALBFv3_RS17100 0.65 -0.5
323,863 + RALBFv3_RS17100 0.82 +1.6
323,864 - RALBFv3_RS17100 0.82 -0.9
323,864 - RALBFv3_RS17100 0.82 +1.6
323,971 + +0.6
323,971 + +0.8
323,972 - -0.4
323,972 - -0.5
324,084 - -0.1
324,403 - RALBFv3_RS17105 0.20 +2.2
324,433 - RALBFv3_RS17105 0.22 +0.4
324,433 - RALBFv3_RS17105 0.22 +0.2
324,439 - RALBFv3_RS17105 0.23 -1.6
324,477 + RALBFv3_RS17105 0.26 -0.5
324,478 - RALBFv3_RS17105 0.26 -0.5
324,510 + RALBFv3_RS17105 0.29 -0.3
324,511 - RALBFv3_RS17105 0.29 -0.8
324,511 - RALBFv3_RS17105 0.29 -0.9
324,615 + RALBFv3_RS17105 0.38 +0.2
324,616 - RALBFv3_RS17105 0.38 +0.3
324,616 - RALBFv3_RS17105 0.38 +0.9
324,616 - RALBFv3_RS17105 0.38 -0.4
324,616 - RALBFv3_RS17105 0.38 -0.2
324,636 + RALBFv3_RS17105 0.39 -0.2
324,636 + RALBFv3_RS17105 0.39 -0.0
324,636 + RALBFv3_RS17105 0.39 -0.3
324,690 + RALBFv3_RS17105 0.44 -0.4
324,690 + RALBFv3_RS17105 0.44 +0.3
324,690 + RALBFv3_RS17105 0.44 -0.8
324,690 + RALBFv3_RS17105 0.44 +0.0
324,690 + RALBFv3_RS17105 0.44 -1.7
324,691 - RALBFv3_RS17105 0.44 +0.8
324,691 - RALBFv3_RS17105 0.44 -0.8
324,738 + RALBFv3_RS17105 0.48 -0.2
324,738 + RALBFv3_RS17105 0.48 +2.8
324,739 - RALBFv3_RS17105 0.48 -0.2
324,756 + RALBFv3_RS17105 0.49 -0.7
324,756 + RALBFv3_RS17105 0.49 -0.8
324,756 + RALBFv3_RS17105 0.49 -0.1
324,756 + RALBFv3_RS17105 0.49 -0.4
324,757 - RALBFv3_RS17105 0.50 -0.2
324,757 - RALBFv3_RS17105 0.50 -0.6
324,849 + RALBFv3_RS17105 0.57 -0.7
324,849 + RALBFv3_RS17105 0.57 +0.1
324,850 - RALBFv3_RS17105 0.57 +2.3
324,850 - RALBFv3_RS17105 0.57 -1.8
324,852 + RALBFv3_RS17105 0.58 -0.5
324,852 + RALBFv3_RS17105 0.58 +1.9
324,852 + RALBFv3_RS17105 0.58 +0.1
324,852 + RALBFv3_RS17105 0.58 +1.3
324,852 + RALBFv3_RS17105 0.58 +2.9
324,853 - RALBFv3_RS17105 0.58 +0.1
324,853 - RALBFv3_RS17105 0.58 +0.9
324,853 - RALBFv3_RS17105 0.58 +0.6
324,876 + RALBFv3_RS17105 0.60 -1.2
324,876 + RALBFv3_RS17105 0.60 +0.4
324,876 + RALBFv3_RS17105 0.60 -1.2
324,878 - RALBFv3_RS17105 0.60 -0.1
325,320 + +0.2
325,320 + +0.3
325,321 - -0.4
325,402 + -0.8
325,404 + -0.4
325,404 + +0.5
325,404 + -0.0
325,404 + -0.5
325,404 + -0.6
325,404 + -0.4
325,405 - +0.6
325,417 + -1.1
325,418 - -0.7
325,418 - -1.3
325,418 - +1.4
325,418 - +0.4
325,588 + -0.3
325,589 - -0.8
325,589 - +0.2
325,661 - RALBFv3_RS17110 0.14 -0.0
325,702 + RALBFv3_RS17110 0.16 -0.8
325,702 + RALBFv3_RS17110 0.16 -0.2
325,702 + RALBFv3_RS17110 0.16 +0.3
325,703 - RALBFv3_RS17110 0.16 -0.5
325,703 - RALBFv3_RS17110 0.16 +0.4
325,703 - RALBFv3_RS17110 0.16 -0.0
325,721 - RALBFv3_RS17110 0.17 -0.9
326,039 - RALBFv3_RS17110 0.34 -0.2
326,054 + RALBFv3_RS17110 0.35 +0.0
326,055 - RALBFv3_RS17110 0.35 -0.5
326,055 - RALBFv3_RS17110 0.35 -0.0
326,083 + RALBFv3_RS17110 0.36 -0.8
326,083 + RALBFv3_RS17110 0.36 -1.7
326,084 - RALBFv3_RS17110 0.36 -0.4
326,084 - RALBFv3_RS17110 0.36 +0.2
326,084 - RALBFv3_RS17110 0.36 -0.3
326,084 - RALBFv3_RS17110 0.36 -0.6
326,084 - RALBFv3_RS17110 0.36 -0.9
326,084 - RALBFv3_RS17110 0.36 -0.3
326,084 - RALBFv3_RS17110 0.36 -0.4
326,084 - RALBFv3_RS17110 0.36 -1.8
326,236 + RALBFv3_RS17110 0.44 -0.1
326,236 + RALBFv3_RS17110 0.44 -0.3
326,236 + RALBFv3_RS17110 0.44 -0.4
326,237 - RALBFv3_RS17110 0.44 -0.6
326,237 - RALBFv3_RS17110 0.44 +0.0
326,237 - RALBFv3_RS17110 0.44 -0.3
326,237 - RALBFv3_RS17110 0.44 +0.3
326,323 + RALBFv3_RS17110 0.49 +0.6
326,323 + RALBFv3_RS17110 0.49 -0.5
326,324 - RALBFv3_RS17110 0.49 +0.4

Or see this region's nucleotide sequence