Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15765

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15760 and RALBFv3_RS15765 are separated by 249 nucleotidesRALBFv3_RS15765 and RALBFv3_RS15770 are separated by 117 nucleotides RALBFv3_RS15760: RALBFv3_RS15760 - transcriptional repressor LexA, at 3,435,340 to 3,435,990 _RS15760 RALBFv3_RS15765: RALBFv3_RS15765 - ferredoxin--NADP reductase, at 3,436,240 to 3,437,016 _RS15765 RALBFv3_RS15770: RALBFv3_RS15770 - asparaginase, at 3,437,134 to 3,438,129 _RS15770 Position (kb) 3436 3437 3438Strain fitness (log2 ratio) -1 0 1at 3435.654 kb on - strand, within RALBFv3_RS15760at 3436.040 kb on + strandat 3436.141 kb on + strandat 3437.720 kb on - strand, within RALBFv3_RS15770

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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3,435,654 - RALBFv3_RS15760 0.48 -1.3
3,436,040 + -1.6
3,436,141 + -1.7
3,437,720 - RALBFv3_RS15770 0.59 -0.2

Or see this region's nucleotide sequence