Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05445 and RALBFv3_RS05450 are separated by 5 nucleotides RALBFv3_RS05450 and RALBFv3_RS05455 are separated by 27 nucleotides
RALBFv3_RS05445: RALBFv3_RS05445 - TIGR02099 family protein, at 1,203,451 to 1,207,725
_RS05445
RALBFv3_RS05450: RALBFv3_RS05450 - carbon-nitrogen hydrolase family protein, at 1,207,731 to 1,208,600
_RS05450
RALBFv3_RS05455: RALBFv3_RS05455 - metalloprotease TldD, at 1,208,628 to 1,210,088
_RS05455
Position (kb) 1207
1208
1209 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1207.652 kb on - strand at 1207.917 kb on + strand, within RALBFv3_RS05450 at 1207.917 kb on + strand, within RALBFv3_RS05450 at 1207.917 kb on + strand, within RALBFv3_RS05450 at 1207.917 kb on + strand, within RALBFv3_RS05450 at 1208.085 kb on - strand, within RALBFv3_RS05450 at 1208.127 kb on + strand, within RALBFv3_RS05450 at 1208.173 kb on - strand, within RALBFv3_RS05450 at 1208.256 kb on + strand, within RALBFv3_RS05450 at 1208.257 kb on - strand, within RALBFv3_RS05450 at 1208.340 kb on + strand, within RALBFv3_RS05450 at 1208.341 kb on - strand, within RALBFv3_RS05450 at 1208.403 kb on + strand, within RALBFv3_RS05450 at 1208.403 kb on + strand, within RALBFv3_RS05450 at 1208.403 kb on + strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.404 kb on - strand, within RALBFv3_RS05450 at 1208.598 kb on + strand at 1208.598 kb on + strand at 1208.599 kb on - strand at 1208.754 kb on + strand at 1208.776 kb on - strand, within RALBFv3_RS05455 at 1208.890 kb on - strand, within RALBFv3_RS05455 at 1209.015 kb on + strand, within RALBFv3_RS05455 at 1209.015 kb on + strand, within RALBFv3_RS05455 at 1209.016 kb on - strand, within RALBFv3_RS05455 at 1209.016 kb on - strand, within RALBFv3_RS05455 at 1209.016 kb on - strand, within RALBFv3_RS05455 at 1209.145 kb on - strand, within RALBFv3_RS05455 at 1209.145 kb on - strand, within RALBFv3_RS05455 at 1209.279 kb on + strand, within RALBFv3_RS05455 at 1209.280 kb on - strand, within RALBFv3_RS05455 at 1209.291 kb on + strand, within RALBFv3_RS05455 at 1209.418 kb on + strand, within RALBFv3_RS05455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,207,652 - +0.4 1,207,917 + RALBFv3_RS05450 0.21 +0.5 1,207,917 + RALBFv3_RS05450 0.21 +0.2 1,207,917 + RALBFv3_RS05450 0.21 +0.5 1,207,917 + RALBFv3_RS05450 0.21 -0.1 1,208,085 - RALBFv3_RS05450 0.41 +0.3 1,208,127 + RALBFv3_RS05450 0.46 -0.7 1,208,173 - RALBFv3_RS05450 0.51 +0.7 1,208,256 + RALBFv3_RS05450 0.60 +1.5 1,208,257 - RALBFv3_RS05450 0.60 -1.4 1,208,340 + RALBFv3_RS05450 0.70 +1.5 1,208,341 - RALBFv3_RS05450 0.70 +0.0 1,208,403 + RALBFv3_RS05450 0.77 +0.2 1,208,403 + RALBFv3_RS05450 0.77 -0.4 1,208,403 + RALBFv3_RS05450 0.77 +0.2 1,208,404 - RALBFv3_RS05450 0.77 -0.0 1,208,404 - RALBFv3_RS05450 0.77 +1.2 1,208,404 - RALBFv3_RS05450 0.77 +0.7 1,208,404 - RALBFv3_RS05450 0.77 -0.6 1,208,404 - RALBFv3_RS05450 0.77 -0.3 1,208,404 - RALBFv3_RS05450 0.77 -0.9 1,208,404 - RALBFv3_RS05450 0.77 +0.5 1,208,598 + +0.7 1,208,598 + +8.6 1,208,599 - +0.7 1,208,754 + +0.6 1,208,776 - RALBFv3_RS05455 0.10 -1.0 1,208,890 - RALBFv3_RS05455 0.18 -1.2 1,209,015 + RALBFv3_RS05455 0.26 +2.2 1,209,015 + RALBFv3_RS05455 0.26 +0.4 1,209,016 - RALBFv3_RS05455 0.27 -1.1 1,209,016 - RALBFv3_RS05455 0.27 -0.9 1,209,016 - RALBFv3_RS05455 0.27 -1.4 1,209,145 - RALBFv3_RS05455 0.35 -2.1 1,209,145 - RALBFv3_RS05455 0.35 -0.6 1,209,279 + RALBFv3_RS05455 0.45 -0.4 1,209,280 - RALBFv3_RS05455 0.45 -1.3 1,209,291 + RALBFv3_RS05455 0.45 -0.5 1,209,418 + RALBFv3_RS05455 0.54 +1.1
Or see this region's nucleotide sequence