Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04500 and RALBFv3_RS04505 overlap by 11 nucleotides RALBFv3_RS04505 and RALBFv3_RS04515 are separated by 589 nucleotides RALBFv3_RS04515 and RALBFv3_RS04520 are separated by 93 nucleotides RALBFv3_RS04520 and RALBFv3_RS04525 are separated by 64 nucleotides
RALBFv3_RS04500: RALBFv3_RS04500 - hypothetical protein, at 1,011,793 to 1,012,113
_RS04500
RALBFv3_RS04505: RALBFv3_RS04505 - cell division protein ZapA, at 1,012,103 to 1,012,420
_RS04505
RALBFv3_RS04515: RALBFv3_RS04515 - EVE domain-containing protein, at 1,013,010 to 1,013,480
_RS04515
RALBFv3_RS04520: RALBFv3_RS04520 - DUF541 domain-containing protein, at 1,013,574 to 1,014,290
_RS04520
RALBFv3_RS04525: RALBFv3_RS04525 - prolipoprotein diacylglyceryl transferase, at 1,014,355 to 1,015,266
_RS04525
Position (kb) 1013
1014 Strain fitness (log2 ratio) -1
0
1 at 1012.111 kb on + strand at 1012.145 kb on + strand, within RALBFv3_RS04505 at 1012.418 kb on + strand at 1012.494 kb on + strand at 1012.494 kb on + strand at 1012.495 kb on - strand at 1012.495 kb on - strand at 1012.495 kb on - strand at 1012.495 kb on - strand at 1012.497 kb on - strand at 1012.552 kb on + strand at 1012.820 kb on - strand at 1012.842 kb on + strand at 1012.929 kb on - strand at 1012.973 kb on + strand at 1012.974 kb on - strand at 1013.064 kb on - strand, within RALBFv3_RS04515 at 1013.109 kb on + strand, within RALBFv3_RS04515 at 1013.227 kb on - strand, within RALBFv3_RS04515 at 1013.263 kb on - strand, within RALBFv3_RS04515 at 1013.265 kb on + strand, within RALBFv3_RS04515 at 1013.265 kb on + strand, within RALBFv3_RS04515 at 1013.266 kb on - strand, within RALBFv3_RS04515 at 1013.445 kb on + strand at 1013.446 kb on - strand at 1013.505 kb on + strand at 1013.871 kb on + strand, within RALBFv3_RS04520 at 1013.927 kb on - strand, within RALBFv3_RS04520 at 1014.123 kb on + strand, within RALBFv3_RS04520 at 1014.123 kb on + strand, within RALBFv3_RS04520 at 1014.124 kb on - strand, within RALBFv3_RS04520 at 1014.174 kb on - strand, within RALBFv3_RS04520 at 1014.174 kb on - strand, within RALBFv3_RS04520 at 1014.288 kb on + strand at 1014.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,012,111 + +1.1 1,012,145 + RALBFv3_RS04505 0.13 -1.7 1,012,418 + -0.2 1,012,494 + -0.3 1,012,494 + -0.9 1,012,495 - -0.6 1,012,495 - +1.1 1,012,495 - -0.7 1,012,495 - -0.4 1,012,497 - +0.1 1,012,552 + +0.4 1,012,820 - -0.1 1,012,842 + -1.0 1,012,929 - -1.4 1,012,973 + +1.0 1,012,974 - -0.0 1,013,064 - RALBFv3_RS04515 0.11 +1.4 1,013,109 + RALBFv3_RS04515 0.21 +1.6 1,013,227 - RALBFv3_RS04515 0.46 -0.3 1,013,263 - RALBFv3_RS04515 0.54 +0.4 1,013,265 + RALBFv3_RS04515 0.54 +0.0 1,013,265 + RALBFv3_RS04515 0.54 +0.9 1,013,266 - RALBFv3_RS04515 0.54 -0.3 1,013,445 + -0.6 1,013,446 - -0.4 1,013,505 + -1.1 1,013,871 + RALBFv3_RS04520 0.41 -0.4 1,013,927 - RALBFv3_RS04520 0.49 +1.0 1,014,123 + RALBFv3_RS04520 0.77 +0.1 1,014,123 + RALBFv3_RS04520 0.77 +0.0 1,014,124 - RALBFv3_RS04520 0.77 +0.7 1,014,174 - RALBFv3_RS04520 0.84 -0.1 1,014,174 - RALBFv3_RS04520 0.84 -0.4 1,014,288 + +0.2 1,014,289 - +1.4
Or see this region's nucleotide sequence