Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04270 and RALBFv3_RS04275 overlap by 1 nucleotides RALBFv3_RS04275 and RALBFv3_RS04280 are separated by 109 nucleotides
RALBFv3_RS04270: RALBFv3_RS04270 - DNA-directed RNA polymerase sigma-70 factor, at 952,761 to 953,408
_RS04270
RALBFv3_RS04275: RALBFv3_RS04275 - membrane protein, at 953,408 to 954,127
_RS04275
RALBFv3_RS04280: RALBFv3_RS04280 - argininosuccinate lyase, at 954,237 to 955,652
_RS04280
Position (kb) 954
955
956 Strain fitness (log2 ratio) -1
0
1 at 953.457 kb on - strand at 954.170 kb on + strand at 954.171 kb on - strand at 954.171 kb on - strand at 954.171 kb on - strand at 954.171 kb on - strand at 955.729 kb on + strand at 955.729 kb on + strand at 955.730 kb on - strand at 955.737 kb on - strand at 955.854 kb on - strand at 955.868 kb on + strand at 955.868 kb on + strand at 955.868 kb on + strand at 956.062 kb on + strand at 956.062 kb on + strand at 956.063 kb on - strand at 956.113 kb on + strand at 956.116 kb on + strand at 956.116 kb on + strand at 956.116 kb on + strand at 956.117 kb on - strand at 956.315 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.365 kb on + strand at 956.366 kb on - strand at 956.366 kb on - strand at 956.366 kb on - strand at 956.366 kb on - strand at 956.366 kb on - strand at 956.556 kb on + strand at 956.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 953,457 - +0.9 954,170 + +0.1 954,171 - -0.4 954,171 - -0.6 954,171 - -0.5 954,171 - +0.5 955,729 + -0.0 955,729 + -1.0 955,730 - +0.7 955,737 - +0.0 955,854 - -0.4 955,868 + +0.5 955,868 + -0.6 955,868 + -0.8 956,062 + -0.4 956,062 + +0.3 956,063 - -0.5 956,113 + +1.1 956,116 + -0.5 956,116 + +0.1 956,116 + -1.5 956,117 - -0.6 956,315 + -0.3 956,365 + +0.8 956,365 + +0.6 956,365 + +0.3 956,365 + -0.3 956,365 + +0.0 956,365 + +0.5 956,365 + -0.9 956,365 + -1.1 956,366 - +0.0 956,366 - +0.6 956,366 - -0.1 956,366 - -0.5 956,366 - -0.3 956,556 + -1.7 956,556 + +0.3
Or see this region's nucleotide sequence