Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02825 and RALBFv3_RS02830 are separated by 10 nucleotides RALBFv3_RS02830 and RALBFv3_RS02835 are separated by 10 nucleotides RALBFv3_RS02835 and RALBFv3_RS02840 are separated by 32 nucleotides RALBFv3_RS02840 and RALBFv3_RS02845 are separated by 45 nucleotides
RALBFv3_RS02825: RALBFv3_RS02825 - urease subunit alpha, at 625,601 to 627,319
_RS02825
RALBFv3_RS02830: RALBFv3_RS02830 - urease subunit beta, at 627,330 to 627,635
_RS02830
RALBFv3_RS02835: RALBFv3_RS02835 - urease accessory protein UreJ, at 627,646 to 628,263
_RS02835
RALBFv3_RS02840: RALBFv3_RS02840 - urease subunit gamma, at 628,296 to 628,598
_RS02840
RALBFv3_RS02845: RALBFv3_RS02845 - urease accessory protein, at 628,644 to 629,531
_RS02845
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1 at 626.791 kb on - strand, within RALBFv3_RS02825 at 626.820 kb on + strand, within RALBFv3_RS02825 at 626.820 kb on + strand, within RALBFv3_RS02825 at 626.821 kb on - strand, within RALBFv3_RS02825 at 627.508 kb on + strand, within RALBFv3_RS02830 at 627.509 kb on - strand, within RALBFv3_RS02830 at 627.518 kb on - strand, within RALBFv3_RS02830 at 628.424 kb on - strand, within RALBFv3_RS02840 at 628.424 kb on - strand, within RALBFv3_RS02840 at 628.426 kb on + strand, within RALBFv3_RS02840 at 628.426 kb on + strand, within RALBFv3_RS02840 at 628.427 kb on - strand, within RALBFv3_RS02840 at 628.771 kb on - strand, within RALBFv3_RS02845 at 628.771 kb on - strand, within RALBFv3_RS02845 at 628.835 kb on - strand, within RALBFv3_RS02845
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 626,791 - RALBFv3_RS02825 0.69 -0.1 626,820 + RALBFv3_RS02825 0.71 -0.7 626,820 + RALBFv3_RS02825 0.71 +0.0 626,821 - RALBFv3_RS02825 0.71 +0.7 627,508 + RALBFv3_RS02830 0.58 +0.9 627,509 - RALBFv3_RS02830 0.58 -1.1 627,518 - RALBFv3_RS02830 0.61 +0.1 628,424 - RALBFv3_RS02840 0.42 +0.2 628,424 - RALBFv3_RS02840 0.42 +0.8 628,426 + RALBFv3_RS02840 0.43 +0.3 628,426 + RALBFv3_RS02840 0.43 -0.5 628,427 - RALBFv3_RS02840 0.43 -0.3 628,771 - RALBFv3_RS02845 0.14 -0.4 628,771 - RALBFv3_RS02845 0.14 +0.4 628,835 - RALBFv3_RS02845 0.22 -0.2
Or see this region's nucleotide sequence