Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02390

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02385 and RALBFv3_RS02390 overlap by 4 nucleotidesRALBFv3_RS02390 and RALBFv3_RS02395 are separated by 443 nucleotides RALBFv3_RS02385: RALBFv3_RS02385 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 531,361 to 533,658 _RS02385 RALBFv3_RS02390: RALBFv3_RS02390 - (2Fe-2S)-binding protein, at 533,655 to 534,122 _RS02390 RALBFv3_RS02395: RALBFv3_RS02395 - hypothetical protein, at 534,566 to 534,889 _RS02395 Position (kb) 533 534 535Strain fitness (log2 ratio) -1 0 1 2at 532.718 kb on + strand, within RALBFv3_RS02385at 532.718 kb on + strand, within RALBFv3_RS02385at 532.868 kb on + strand, within RALBFv3_RS02385at 532.868 kb on + strand, within RALBFv3_RS02385at 532.869 kb on - strand, within RALBFv3_RS02385at 532.869 kb on - strand, within RALBFv3_RS02385at 533.716 kb on + strand, within RALBFv3_RS02390at 533.717 kb on - strand, within RALBFv3_RS02390at 534.186 kb on + strandat 534.294 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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532,718 + RALBFv3_RS02385 0.59 -0.0
532,718 + RALBFv3_RS02385 0.59 -0.9
532,868 + RALBFv3_RS02385 0.66 +0.0
532,868 + RALBFv3_RS02385 0.66 +2.3
532,869 - RALBFv3_RS02385 0.66 +0.9
532,869 - RALBFv3_RS02385 0.66 +0.2
533,716 + RALBFv3_RS02390 0.13 +1.4
533,717 - RALBFv3_RS02390 0.13 +0.8
534,186 + -0.1
534,294 + +1.6

Or see this region's nucleotide sequence