Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01100 and RALBFv3_RS01105 are separated by 181 nucleotides RALBFv3_RS01105 and RALBFv3_RS01110 are separated by 32 nucleotides RALBFv3_RS01110 and RALBFv3_RS01115 are separated by 48 nucleotides
RALBFv3_RS01100: RALBFv3_RS01100 - 6-aminohexanoate-dimer hydrolase, at 242,171 to 243,493
_RS01100
RALBFv3_RS01105: RALBFv3_RS01105 - PaaI family thioesterase, at 243,675 to 244,109
_RS01105
RALBFv3_RS01110: RALBFv3_RS01110 - gluconate 2-dehydrogenase, at 244,142 to 244,924
_RS01110
RALBFv3_RS01115: RALBFv3_RS01115 - acyl-CoA dehydrogenase, at 244,973 to 246,841
_RS01115
Position (kb) 243
244
245 Strain fitness (log2 ratio) -1
0
1 at 242.684 kb on + strand, within RALBFv3_RS01100 at 242.706 kb on + strand, within RALBFv3_RS01100 at 242.707 kb on - strand, within RALBFv3_RS01100 at 242.755 kb on - strand, within RALBFv3_RS01100 at 242.820 kb on + strand, within RALBFv3_RS01100 at 242.821 kb on - strand at 242.850 kb on + strand, within RALBFv3_RS01100 at 242.851 kb on - strand, within RALBFv3_RS01100 at 243.076 kb on - strand, within RALBFv3_RS01100 at 243.118 kb on - strand, within RALBFv3_RS01100 at 243.118 kb on - strand, within RALBFv3_RS01100 at 244.365 kb on + strand, within RALBFv3_RS01110 at 244.366 kb on - strand, within RALBFv3_RS01110 at 244.429 kb on - strand, within RALBFv3_RS01110
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 242,684 + RALBFv3_RS01100 0.39 -0.7 242,706 + RALBFv3_RS01100 0.40 +1.1 242,707 - RALBFv3_RS01100 0.41 +0.3 242,755 - RALBFv3_RS01100 0.44 -0.6 242,820 + RALBFv3_RS01100 0.49 -0.1 242,821 - +1.3 242,850 + RALBFv3_RS01100 0.51 -0.5 242,851 - RALBFv3_RS01100 0.51 -0.5 243,076 - RALBFv3_RS01100 0.68 +0.2 243,118 - RALBFv3_RS01100 0.72 -0.6 243,118 - RALBFv3_RS01100 0.72 -0.7 244,365 + RALBFv3_RS01110 0.28 +1.4 244,366 - RALBFv3_RS01110 0.29 +0.5 244,429 - RALBFv3_RS01110 0.37 +0.2
Or see this region's nucleotide sequence