Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS01070 and RALBFv3_RS01075 are separated by 33 nucleotides RALBFv3_RS01075 and RALBFv3_RS01080 are separated by 77 nucleotides
RALBFv3_RS01070: RALBFv3_RS01070 - 4-hydroxybutyrate dehydrogenase, at 236,026 to 237,174
_RS01070
RALBFv3_RS01075: RALBFv3_RS01075 - alpha/beta hydrolase, at 237,208 to 238,143
_RS01075
RALBFv3_RS01080: RALBFv3_RS01080 - NAD(P)-dependent oxidoreductase, at 238,221 to 239,123
_RS01080
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1
2 at 236.372 kb on - strand, within RALBFv3_RS01070 at 236.945 kb on - strand, within RALBFv3_RS01070 at 237.173 kb on - strand at 237.210 kb on - strand at 237.473 kb on + strand, within RALBFv3_RS01075 at 237.473 kb on + strand, within RALBFv3_RS01075 at 237.474 kb on - strand, within RALBFv3_RS01075 at 237.537 kb on - strand, within RALBFv3_RS01075 at 237.996 kb on - strand, within RALBFv3_RS01075 at 238.195 kb on + strand at 238.196 kb on - strand at 238.196 kb on - strand at 238.351 kb on + strand, within RALBFv3_RS01080 at 238.352 kb on - strand, within RALBFv3_RS01080 at 238.356 kb on - strand, within RALBFv3_RS01080 at 238.358 kb on - strand, within RALBFv3_RS01080 at 238.358 kb on - strand, within RALBFv3_RS01080 at 238.642 kb on + strand, within RALBFv3_RS01080 at 238.643 kb on - strand, within RALBFv3_RS01080 at 239.123 kb on + strand at 239.123 kb on + strand at 239.123 kb on + strand at 239.124 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 236,372 - RALBFv3_RS01070 0.30 +0.5 236,945 - RALBFv3_RS01070 0.80 -0.5 237,173 - +0.2 237,210 - -0.5 237,473 + RALBFv3_RS01075 0.28 +1.6 237,473 + RALBFv3_RS01075 0.28 -0.9 237,474 - RALBFv3_RS01075 0.28 -0.1 237,537 - RALBFv3_RS01075 0.35 +0.3 237,996 - RALBFv3_RS01075 0.84 +0.3 238,195 + -0.9 238,196 - +1.0 238,196 - +0.9 238,351 + RALBFv3_RS01080 0.14 -0.4 238,352 - RALBFv3_RS01080 0.15 +1.2 238,356 - RALBFv3_RS01080 0.15 -0.9 238,358 - RALBFv3_RS01080 0.15 +1.0 238,358 - RALBFv3_RS01080 0.15 -0.1 238,642 + RALBFv3_RS01080 0.47 -0.2 238,643 - RALBFv3_RS01080 0.47 +2.0 239,123 + -1.2 239,123 + +1.4 239,123 + +0.6 239,124 - -0.8
Or see this region's nucleotide sequence