Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5668

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5667 and Pf1N1B4_5668 are separated by 191 nucleotidesPf1N1B4_5668 and Pf1N1B4_5669 are separated by 202 nucleotidesPf1N1B4_5669 and Pf1N1B4_5670 are separated by 64 nucleotides Pf1N1B4_5667 - hypothetical protein, at 100,927 to 104,862 _5667 Pf1N1B4_5668 - Peptidase, U7 family, at 105,054 to 106,076 _5668 Pf1N1B4_5669 - Phosphoglycerate mutase family protein, at 106,279 to 106,989 _5669 Pf1N1B4_5670 - SCP-2 sterol transfer family protein, at 107,054 to 107,368 _5670 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 104.071 kb on - strand, within Pf1N1B4_5667at 104.071 kb on - strand, within Pf1N1B4_5667at 104.336 kb on + strandat 104.336 kb on + strand, within Pf1N1B4_5667at 104.336 kb on + strand, within Pf1N1B4_5667at 104.337 kb on - strand, within Pf1N1B4_5667at 104.337 kb on - strand, within Pf1N1B4_5667at 104.337 kb on - strand, within Pf1N1B4_5667at 104.337 kb on - strand, within Pf1N1B4_5667at 104.459 kb on + strand, within Pf1N1B4_5667at 104.459 kb on + strandat 104.460 kb on - strand, within Pf1N1B4_5667at 104.460 kb on - strand, within Pf1N1B4_5667at 104.546 kb on + strandat 104.594 kb on + strandat 104.595 kb on - strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.678 kb on + strandat 104.679 kb on - strandat 104.679 kb on - strandat 104.679 kb on - strandat 104.682 kb on + strandat 104.683 kb on - strandat 104.683 kb on - strandat 104.683 kb on - strandat 104.685 kb on - strandat 104.736 kb on + strandat 104.899 kb on + strandat 104.921 kb on - strandat 105.056 kb on - strandat 105.208 kb on + strand, within Pf1N1B4_5668at 105.208 kb on + strand, within Pf1N1B4_5668at 105.209 kb on - strandat 105.285 kb on + strandat 105.286 kb on - strand, within Pf1N1B4_5668at 105.566 kb on - strand, within Pf1N1B4_5668at 106.291 kb on + strandat 106.291 kb on + strandat 106.333 kb on + strandat 106.333 kb on + strandat 107.030 kb on + strandat 107.030 kb on + strandat 107.030 kb on + strandat 107.030 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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104,071 - Pf1N1B4_5667 0.80 -0.1
104,071 - Pf1N1B4_5667 0.80 +0.9
104,336 + -0.1
104,336 + Pf1N1B4_5667 0.87 +0.6
104,336 + Pf1N1B4_5667 0.87 -0.1
104,337 - Pf1N1B4_5667 0.87 +1.2
104,337 - Pf1N1B4_5667 0.87 -1.0
104,337 - Pf1N1B4_5667 0.87 -1.1
104,337 - Pf1N1B4_5667 0.87 -1.1
104,459 + Pf1N1B4_5667 0.90 +0.6
104,459 + -0.7
104,460 - Pf1N1B4_5667 0.90 +0.9
104,460 - Pf1N1B4_5667 0.90 +0.1
104,546 + -0.1
104,594 + -0.4
104,595 - -0.8
104,678 + -0.1
104,678 + -1.8
104,678 + +0.1
104,678 + -0.1
104,678 + +1.1
104,678 + +0.4
104,678 + -0.4
104,678 + +0.3
104,678 + +0.6
104,678 + -0.8
104,679 - +2.5
104,679 - +0.1
104,679 - +0.6
104,682 + -0.6
104,683 - +0.6
104,683 - -1.7
104,683 - +0.6
104,685 - +0.0
104,736 + +0.1
104,899 + +1.3
104,921 - -0.7
105,056 - -0.9
105,208 + Pf1N1B4_5668 0.15 -1.1
105,208 + Pf1N1B4_5668 0.15 -0.4
105,209 - +0.9
105,285 + -1.1
105,286 - Pf1N1B4_5668 0.23 -1.3
105,566 - Pf1N1B4_5668 0.50 -2.4
106,291 + +0.5
106,291 + -0.7
106,333 + +0.7
106,333 + +0.3
107,030 + -0.1
107,030 + -0.4
107,030 + +0.3
107,030 + -0.1

Or see this region's nucleotide sequence