Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5598

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5597 and Pf1N1B4_5598 are separated by 152 nucleotidesPf1N1B4_5598 and Pf1N1B4_5599 are separated by 307 nucleotides Pf1N1B4_5597 - FIG005548: transport protein, at 19,968 to 21,125 _5597 Pf1N1B4_5598 - hypothetical protein, at 21,278 to 21,475 _5598 Pf1N1B4_5599 - transcriptional regulator, TetR family, at 21,783 to 22,394 _5599 Position (kb) 21 22Strain fitness (log2 ratio) -2 -1 0 1 2 3at 20.282 kb on - strand, within Pf1N1B4_5597at 20.451 kb on + strandat 20.471 kb on - strand, within Pf1N1B4_5597at 20.648 kb on - strand, within Pf1N1B4_5597at 20.648 kb on - strand, within Pf1N1B4_5597at 20.746 kb on + strand, within Pf1N1B4_5597at 20.747 kb on - strand, within Pf1N1B4_5597at 21.094 kb on - strandat 21.210 kb on + strandat 21.211 kb on - strandat 21.211 kb on - strandat 21.211 kb on - strandat 21.211 kb on - strandat 21.211 kb on - strandat 21.316 kb on - strand, within Pf1N1B4_5598at 21.409 kb on - strand, within Pf1N1B4_5598at 21.409 kb on - strand, within Pf1N1B4_5598at 21.471 kb on + strandat 21.471 kb on + strandat 21.472 kb on - strandat 21.472 kb on - strandat 21.472 kb on - strandat 21.621 kb on + strandat 21.934 kb on - strandat 22.063 kb on + strand, within Pf1N1B4_5599at 22.064 kb on - strand, within Pf1N1B4_5599at 22.351 kb on + strandat 22.359 kb on - strandat 22.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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20,282 - Pf1N1B4_5597 0.27 -1.6
20,451 + +0.2
20,471 - Pf1N1B4_5597 0.43 -0.9
20,648 - Pf1N1B4_5597 0.59 -2.3
20,648 - Pf1N1B4_5597 0.59 +0.1
20,746 + Pf1N1B4_5597 0.67 -1.0
20,747 - Pf1N1B4_5597 0.67 -0.6
21,094 - -0.2
21,210 + -0.1
21,211 - +0.9
21,211 - -0.8
21,211 - +0.5
21,211 - -0.4
21,211 - -0.4
21,316 - Pf1N1B4_5598 0.19 -0.9
21,409 - Pf1N1B4_5598 0.66 -0.6
21,409 - Pf1N1B4_5598 0.66 -2.3
21,471 + -1.7
21,471 + -0.2
21,472 - +0.7
21,472 - -0.7
21,472 - +3.2
21,621 + -0.1
21,934 - +1.5
22,063 + Pf1N1B4_5599 0.46 +0.3
22,064 - Pf1N1B4_5599 0.46 -2.4
22,351 + +0.9
22,359 - +0.2
22,377 + -0.9

Or see this region's nucleotide sequence