Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5566 and Pf1N1B4_5567 overlap by 49 nucleotides Pf1N1B4_5567 and Pf1N1B4_5568 are separated by 31 nucleotides Pf1N1B4_5568 and Pf1N1B4_5569 are separated by 167 nucleotides
Pf1N1B4_5566 - putative replication protein (repA-like), at 338,147 to 339,406
_5566
Pf1N1B4_5567 - transcriptional regulator MvaT, P16 subunit, putative, at 339,358 to 339,717
_5567
Pf1N1B4_5568 - hypothetical protein, at 339,749 to 340,165
_5568
Pf1N1B4_5569 - hypothetical protein, at 340,333 to 340,686
_5569
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.815 kb on - strand, within Pf1N1B4_5566 at 338.816 kb on + strand, within Pf1N1B4_5566 at 338.817 kb on - strand, within Pf1N1B4_5566 at 338.817 kb on - strand, within Pf1N1B4_5566 at 338.817 kb on - strand at 338.861 kb on - strand, within Pf1N1B4_5566 at 338.862 kb on + strand, within Pf1N1B4_5566 at 338.862 kb on + strand, within Pf1N1B4_5566 at 338.891 kb on + strand at 338.892 kb on - strand, within Pf1N1B4_5566 at 338.984 kb on + strand, within Pf1N1B4_5566 at 338.984 kb on + strand, within Pf1N1B4_5566 at 338.984 kb on + strand at 339.012 kb on + strand, within Pf1N1B4_5566 at 339.012 kb on + strand at 339.012 kb on + strand at 339.022 kb on + strand, within Pf1N1B4_5566 at 339.105 kb on + strand, within Pf1N1B4_5566 at 339.105 kb on + strand, within Pf1N1B4_5566 at 339.106 kb on - strand, within Pf1N1B4_5566 at 339.290 kb on + strand at 339.290 kb on + strand at 339.291 kb on - strand at 339.307 kb on + strand at 339.307 kb on + strand at 339.308 kb on - strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.310 kb on + strand at 339.317 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.320 kb on + strand at 339.353 kb on + strand at 339.353 kb on + strand at 339.353 kb on + strand at 339.354 kb on - strand at 339.402 kb on - strand at 339.448 kb on + strand, within Pf1N1B4_5567 at 339.449 kb on - strand, within Pf1N1B4_5567 at 339.482 kb on + strand, within Pf1N1B4_5567 at 339.482 kb on + strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.483 kb on - strand, within Pf1N1B4_5567 at 339.499 kb on + strand, within Pf1N1B4_5567 at 339.654 kb on + strand, within Pf1N1B4_5567 at 339.711 kb on - strand at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand, within Pf1N1B4_5568 at 339.897 kb on + strand at 339.898 kb on - strand, within Pf1N1B4_5568 at 339.898 kb on - strand, within Pf1N1B4_5568 at 339.898 kb on - strand, within Pf1N1B4_5568 at 340.165 kb on + strand at 340.165 kb on + strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.235 kb on - strand at 340.294 kb on + strand at 340.294 kb on + strand at 340.312 kb on - strand at 340.329 kb on - strand at 340.329 kb on - strand at 340.329 kb on - strand at 340.600 kb on + strand, within Pf1N1B4_5569 at 340.601 kb on - strand, within Pf1N1B4_5569 at 340.657 kb on - strand at 340.730 kb on + strand at 340.730 kb on + strand at 340.731 kb on - strand at 340.752 kb on + strand at 340.752 kb on + strand at 340.753 kb on - strand at 340.991 kb on + strand at 340.992 kb on - strand at 341.126 kb on - strand at 341.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 338,815 - Pf1N1B4_5566 0.53 +1.6 338,816 + Pf1N1B4_5566 0.53 -0.2 338,817 - Pf1N1B4_5566 0.53 +0.4 338,817 - Pf1N1B4_5566 0.53 +1.4 338,817 - +0.4 338,861 - Pf1N1B4_5566 0.57 +0.3 338,862 + Pf1N1B4_5566 0.57 -0.2 338,862 + Pf1N1B4_5566 0.57 +0.4 338,891 + +0.9 338,892 - Pf1N1B4_5566 0.59 -0.0 338,984 + Pf1N1B4_5566 0.66 -0.5 338,984 + Pf1N1B4_5566 0.66 +0.4 338,984 + +0.4 339,012 + Pf1N1B4_5566 0.69 -2.0 339,012 + +2.7 339,012 + -0.4 339,022 + Pf1N1B4_5566 0.69 -0.7 339,105 + Pf1N1B4_5566 0.76 -1.9 339,105 + Pf1N1B4_5566 0.76 +1.6 339,106 - Pf1N1B4_5566 0.76 +1.1 339,290 + -1.2 339,290 + +0.2 339,291 - +1.4 339,307 + +0.6 339,307 + -1.4 339,308 - -0.9 339,310 + +0.2 339,310 + +0.3 339,310 + +0.4 339,310 + -0.6 339,317 + -0.2 339,320 + +1.1 339,320 + -0.2 339,320 + -0.0 339,320 + -1.5 339,353 + +0.1 339,353 + +1.4 339,353 + -0.9 339,354 - +0.8 339,402 - +0.8 339,448 + Pf1N1B4_5567 0.25 +1.2 339,449 - Pf1N1B4_5567 0.25 -0.0 339,482 + Pf1N1B4_5567 0.34 +0.8 339,482 + Pf1N1B4_5567 0.34 -0.4 339,483 - Pf1N1B4_5567 0.35 -0.6 339,483 - Pf1N1B4_5567 0.35 -0.8 339,483 - Pf1N1B4_5567 0.35 +0.4 339,483 - Pf1N1B4_5567 0.35 -0.3 339,499 + Pf1N1B4_5567 0.39 -0.8 339,654 + Pf1N1B4_5567 0.82 -1.6 339,711 - +0.2 339,897 + Pf1N1B4_5568 0.35 +0.5 339,897 + Pf1N1B4_5568 0.35 +0.5 339,897 + Pf1N1B4_5568 0.35 +0.5 339,897 + -0.2 339,898 - Pf1N1B4_5568 0.36 +0.1 339,898 - Pf1N1B4_5568 0.36 +0.4 339,898 - Pf1N1B4_5568 0.36 +1.7 340,165 + +0.6 340,165 + +0.4 340,235 - +0.7 340,235 - +2.1 340,235 - +0.5 340,235 - +1.2 340,294 + +0.7 340,294 + +0.7 340,312 - -0.0 340,329 - +0.4 340,329 - +0.4 340,329 - +0.8 340,600 + Pf1N1B4_5569 0.75 -1.2 340,601 - Pf1N1B4_5569 0.76 -0.6 340,657 - +0.2 340,730 + +2.0 340,730 + -0.2 340,731 - -0.3 340,752 + -0.7 340,752 + -0.6 340,753 - -0.6 340,991 + +1.4 340,992 - -0.2 341,126 - -2.2 341,126 - -0.2
Or see this region's nucleotide sequence