Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5529 and Pf1N1B4_5530 are separated by 161 nucleotides Pf1N1B4_5530 and Pf1N1B4_5531 are separated by 79 nucleotides
Pf1N1B4_5529 - hypothetical protein, at 288,321 to 289,550
_5529
Pf1N1B4_5530 - hypothetical protein, at 289,712 to 290,338
_5530
Pf1N1B4_5531 - hypothetical protein, at 290,418 to 290,804
_5531
Position (kb) 289
290
291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 288.764 kb on + strand, within Pf1N1B4_5529 at 288.765 kb on - strand, within Pf1N1B4_5529 at 288.765 kb on - strand, within Pf1N1B4_5529 at 288.839 kb on + strand, within Pf1N1B4_5529 at 288.839 kb on + strand, within Pf1N1B4_5529 at 288.840 kb on - strand, within Pf1N1B4_5529 at 288.840 kb on - strand, within Pf1N1B4_5529 at 288.840 kb on - strand, within Pf1N1B4_5529 at 288.871 kb on + strand, within Pf1N1B4_5529 at 289.052 kb on - strand, within Pf1N1B4_5529 at 289.180 kb on + strand, within Pf1N1B4_5529 at 289.180 kb on + strand, within Pf1N1B4_5529 at 289.181 kb on - strand, within Pf1N1B4_5529 at 289.181 kb on - strand, within Pf1N1B4_5529 at 289.201 kb on + strand, within Pf1N1B4_5529 at 289.201 kb on + strand, within Pf1N1B4_5529 at 289.201 kb on + strand, within Pf1N1B4_5529 at 289.201 kb on + strand, within Pf1N1B4_5529 at 289.202 kb on - strand, within Pf1N1B4_5529 at 289.202 kb on - strand, within Pf1N1B4_5529 at 289.202 kb on - strand, within Pf1N1B4_5529 at 289.202 kb on - strand, within Pf1N1B4_5529 at 289.366 kb on + strand, within Pf1N1B4_5529 at 289.366 kb on + strand, within Pf1N1B4_5529 at 289.366 kb on + strand, within Pf1N1B4_5529 at 289.367 kb on - strand, within Pf1N1B4_5529 at 289.495 kb on + strand at 289.495 kb on + strand at 289.495 kb on + strand at 289.495 kb on + strand at 289.495 kb on + strand at 289.496 kb on - strand at 289.496 kb on - strand at 289.496 kb on - strand at 289.496 kb on - strand at 289.511 kb on + strand at 289.544 kb on + strand at 289.545 kb on - strand at 289.594 kb on + strand at 289.594 kb on + strand at 289.731 kb on + strand at 289.732 kb on - strand at 289.810 kb on - strand, within Pf1N1B4_5530 at 289.992 kb on + strand, within Pf1N1B4_5530 at 289.992 kb on + strand, within Pf1N1B4_5530 at 289.992 kb on + strand at 289.992 kb on + strand, within Pf1N1B4_5530 at 289.992 kb on + strand, within Pf1N1B4_5530 at 289.993 kb on - strand, within Pf1N1B4_5530 at 289.993 kb on - strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.041 kb on + strand at 290.041 kb on + strand, within Pf1N1B4_5530 at 290.042 kb on - strand, within Pf1N1B4_5530 at 290.042 kb on - strand, within Pf1N1B4_5530 at 290.042 kb on - strand at 290.042 kb on - strand, within Pf1N1B4_5530 at 290.042 kb on - strand, within Pf1N1B4_5530 at 290.059 kb on + strand, within Pf1N1B4_5530 at 290.068 kb on - strand, within Pf1N1B4_5530 at 290.095 kb on + strand, within Pf1N1B4_5530 at 290.105 kb on + strand at 290.106 kb on - strand, within Pf1N1B4_5530 at 290.152 kb on + strand, within Pf1N1B4_5530 at 290.153 kb on - strand, within Pf1N1B4_5530 at 290.153 kb on - strand, within Pf1N1B4_5530 at 290.232 kb on + strand, within Pf1N1B4_5530 at 290.232 kb on + strand, within Pf1N1B4_5530 at 290.232 kb on + strand, within Pf1N1B4_5530 at 290.232 kb on + strand, within Pf1N1B4_5530 at 290.232 kb on + strand, within Pf1N1B4_5530 at 290.233 kb on - strand, within Pf1N1B4_5530 at 290.255 kb on + strand, within Pf1N1B4_5530 at 290.275 kb on + strand, within Pf1N1B4_5530 at 290.275 kb on + strand, within Pf1N1B4_5530 at 290.275 kb on + strand, within Pf1N1B4_5530 at 290.276 kb on - strand at 290.276 kb on - strand at 290.276 kb on - strand at 290.276 kb on - strand at 290.306 kb on + strand at 290.306 kb on + strand at 290.306 kb on + strand at 290.306 kb on + strand at 290.306 kb on + strand at 290.307 kb on - strand at 290.307 kb on - strand at 290.307 kb on - strand at 290.307 kb on - strand at 290.408 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.419 kb on + strand at 290.420 kb on - strand at 290.420 kb on - strand at 290.420 kb on - strand at 290.420 kb on - strand at 290.420 kb on - strand at 290.420 kb on - strand at 290.493 kb on + strand at 290.493 kb on + strand, within Pf1N1B4_5531 at 290.493 kb on + strand, within Pf1N1B4_5531 at 290.493 kb on + strand, within Pf1N1B4_5531 at 290.494 kb on - strand, within Pf1N1B4_5531 at 290.494 kb on - strand, within Pf1N1B4_5531 at 290.494 kb on - strand, within Pf1N1B4_5531 at 290.494 kb on - strand, within Pf1N1B4_5531 at 290.497 kb on + strand, within Pf1N1B4_5531 at 290.498 kb on - strand, within Pf1N1B4_5531 at 290.498 kb on - strand, within Pf1N1B4_5531 at 290.506 kb on + strand, within Pf1N1B4_5531 at 290.772 kb on + strand at 290.878 kb on + strand at 290.878 kb on + strand at 290.878 kb on + strand at 290.879 kb on - strand at 290.879 kb on - strand at 290.925 kb on + strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.031 kb on - strand at 291.037 kb on + strand at 291.037 kb on + strand at 291.037 kb on + strand at 291.055 kb on + strand at 291.056 kb on - strand at 291.092 kb on + strand at 291.092 kb on + strand at 291.092 kb on + strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.093 kb on - strand at 291.097 kb on - strand at 291.097 kb on - strand at 291.181 kb on + strand at 291.182 kb on - strand at 291.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 288,764 + Pf1N1B4_5529 0.36 -0.2 288,765 - Pf1N1B4_5529 0.36 -1.2 288,765 - Pf1N1B4_5529 0.36 +1.2 288,839 + Pf1N1B4_5529 0.42 -0.1 288,839 + Pf1N1B4_5529 0.42 -0.8 288,840 - Pf1N1B4_5529 0.42 +1.7 288,840 - Pf1N1B4_5529 0.42 -0.9 288,840 - Pf1N1B4_5529 0.42 -0.2 288,871 + Pf1N1B4_5529 0.45 +0.4 289,052 - Pf1N1B4_5529 0.59 +0.1 289,180 + Pf1N1B4_5529 0.70 -0.9 289,180 + Pf1N1B4_5529 0.70 +0.1 289,181 - Pf1N1B4_5529 0.70 +1.4 289,181 - Pf1N1B4_5529 0.70 +1.2 289,201 + Pf1N1B4_5529 0.72 -1.2 289,201 + Pf1N1B4_5529 0.72 -1.3 289,201 + Pf1N1B4_5529 0.72 -0.9 289,201 + Pf1N1B4_5529 0.72 -0.2 289,202 - Pf1N1B4_5529 0.72 +1.8 289,202 - Pf1N1B4_5529 0.72 -1.2 289,202 - Pf1N1B4_5529 0.72 -1.8 289,202 - Pf1N1B4_5529 0.72 +0.2 289,366 + Pf1N1B4_5529 0.85 -0.4 289,366 + Pf1N1B4_5529 0.85 -1.7 289,366 + Pf1N1B4_5529 0.85 +0.4 289,367 - Pf1N1B4_5529 0.85 -0.6 289,495 + +0.2 289,495 + -1.6 289,495 + +0.4 289,495 + -1.4 289,495 + -1.1 289,496 - -1.5 289,496 - -0.8 289,496 - -0.0 289,496 - -1.0 289,511 + -0.3 289,544 + -0.2 289,545 - -0.5 289,594 + -0.9 289,594 + +0.2 289,731 + -0.7 289,732 - +0.1 289,810 - Pf1N1B4_5530 0.16 -1.4 289,992 + Pf1N1B4_5530 0.45 -0.6 289,992 + Pf1N1B4_5530 0.45 +1.6 289,992 + -1.2 289,992 + Pf1N1B4_5530 0.45 +0.1 289,992 + Pf1N1B4_5530 0.45 +1.4 289,993 - Pf1N1B4_5530 0.45 +0.6 289,993 - Pf1N1B4_5530 0.45 +1.4 290,041 + Pf1N1B4_5530 0.52 -0.6 290,041 + Pf1N1B4_5530 0.52 -0.8 290,041 + Pf1N1B4_5530 0.52 -1.9 290,041 + Pf1N1B4_5530 0.52 +0.2 290,041 + Pf1N1B4_5530 0.52 -0.7 290,041 + Pf1N1B4_5530 0.52 +1.8 290,041 + -1.4 290,041 + Pf1N1B4_5530 0.52 -0.2 290,042 - Pf1N1B4_5530 0.53 -0.6 290,042 - Pf1N1B4_5530 0.53 +1.1 290,042 - +1.4 290,042 - Pf1N1B4_5530 0.53 -0.2 290,042 - Pf1N1B4_5530 0.53 +1.9 290,059 + Pf1N1B4_5530 0.55 -0.8 290,068 - Pf1N1B4_5530 0.57 -1.0 290,095 + Pf1N1B4_5530 0.61 +0.2 290,105 + -0.2 290,106 - Pf1N1B4_5530 0.63 -0.2 290,152 + Pf1N1B4_5530 0.70 -2.3 290,153 - Pf1N1B4_5530 0.70 -1.6 290,153 - Pf1N1B4_5530 0.70 -2.0 290,232 + Pf1N1B4_5530 0.83 +0.4 290,232 + Pf1N1B4_5530 0.83 -1.1 290,232 + Pf1N1B4_5530 0.83 -1.3 290,232 + Pf1N1B4_5530 0.83 -0.5 290,232 + Pf1N1B4_5530 0.83 -0.1 290,233 - Pf1N1B4_5530 0.83 +0.7 290,255 + Pf1N1B4_5530 0.87 +1.2 290,275 + Pf1N1B4_5530 0.90 +0.1 290,275 + Pf1N1B4_5530 0.90 -1.6 290,275 + Pf1N1B4_5530 0.90 -0.2 290,276 - +0.3 290,276 - -1.6 290,276 - -1.2 290,276 - -0.7 290,306 + +0.4 290,306 + -0.8 290,306 + +1.1 290,306 + -0.2 290,306 + +1.1 290,307 - -1.7 290,307 - +0.1 290,307 - +0.6 290,307 - +0.4 290,408 + -0.6 290,419 + -0.4 290,419 + -0.4 290,419 + -0.2 290,419 + +0.4 290,419 + -0.9 290,419 + +0.2 290,419 + +0.9 290,420 - -0.4 290,420 - +0.2 290,420 - -0.6 290,420 - +0.2 290,420 - -0.2 290,420 - +0.4 290,493 + -0.2 290,493 + Pf1N1B4_5531 0.19 +1.2 290,493 + Pf1N1B4_5531 0.19 +0.6 290,493 + Pf1N1B4_5531 0.19 -1.4 290,494 - Pf1N1B4_5531 0.20 +0.8 290,494 - Pf1N1B4_5531 0.20 +0.2 290,494 - Pf1N1B4_5531 0.20 -0.6 290,494 - Pf1N1B4_5531 0.20 -0.2 290,497 + Pf1N1B4_5531 0.20 -0.6 290,498 - Pf1N1B4_5531 0.21 +0.6 290,498 - Pf1N1B4_5531 0.21 -1.2 290,506 + Pf1N1B4_5531 0.23 +0.4 290,772 + -0.7 290,878 + -0.5 290,878 + -0.2 290,878 + -1.4 290,879 - -0.4 290,879 - -0.8 290,925 + -0.0 291,031 - -0.2 291,031 - -0.3 291,031 - +2.7 291,031 - +0.1 291,031 - +1.1 291,037 + +0.2 291,037 + +0.4 291,037 + +0.8 291,055 + +0.8 291,056 - +0.4 291,092 + +0.2 291,092 + +0.2 291,092 + -0.4 291,093 - -1.4 291,093 - -0.9 291,093 - +1.8 291,093 - +0.2 291,093 - +0.6 291,093 - +0.7 291,093 - +0.7 291,097 - -0.6 291,097 - +0.2 291,181 + +1.1 291,182 - -1.2 291,182 - -0.6
Or see this region's nucleotide sequence