Experiment: copper (II) chloride 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_537 and Pf1N1B4_538 are separated by 76 nucleotides Pf1N1B4_538 and Pf1N1B4_539 are separated by 120 nucleotides Pf1N1B4_539 and Pf1N1B4_540 are separated by 201 nucleotides
Pf1N1B4_537 - FIG00959721: hypothetical protein, at 635,559 to 636,275
_537
Pf1N1B4_538 - hypothetical protein, at 636,352 to 637,221
_538
Pf1N1B4_539 - Transcriptional regulators, at 637,342 to 637,734
_539
Pf1N1B4_540 - FIG00960825: hypothetical protein, at 637,936 to 638,670
_540
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 635.361 kb on + strand at 635.500 kb on + strand at 635.500 kb on + strand at 635.518 kb on - strand at 635.760 kb on + strand at 635.760 kb on + strand, within Pf1N1B4_537 at 635.760 kb on + strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.761 kb on - strand, within Pf1N1B4_537 at 635.823 kb on + strand, within Pf1N1B4_537 at 635.823 kb on + strand, within Pf1N1B4_537 at 635.824 kb on - strand, within Pf1N1B4_537 at 635.824 kb on - strand, within Pf1N1B4_537 at 635.824 kb on - strand, within Pf1N1B4_537 at 635.834 kb on + strand, within Pf1N1B4_537 at 636.054 kb on + strand, within Pf1N1B4_537 at 636.054 kb on + strand, within Pf1N1B4_537 at 636.054 kb on + strand, within Pf1N1B4_537 at 636.055 kb on - strand, within Pf1N1B4_537 at 636.099 kb on + strand, within Pf1N1B4_537 at 636.099 kb on + strand, within Pf1N1B4_537 at 636.100 kb on - strand, within Pf1N1B4_537 at 636.100 kb on - strand, within Pf1N1B4_537 at 636.114 kb on - strand, within Pf1N1B4_537 at 636.171 kb on + strand, within Pf1N1B4_537 at 636.171 kb on + strand, within Pf1N1B4_537 at 636.172 kb on - strand, within Pf1N1B4_537 at 636.210 kb on + strand at 636.224 kb on + strand at 636.224 kb on + strand at 636.270 kb on + strand at 636.270 kb on + strand at 636.271 kb on - strand at 636.271 kb on - strand at 636.271 kb on - strand at 636.271 kb on - strand at 636.271 kb on - strand at 636.273 kb on + strand at 636.273 kb on + strand at 636.475 kb on + strand, within Pf1N1B4_538 at 636.476 kb on - strand, within Pf1N1B4_538 at 636.699 kb on - strand at 636.784 kb on + strand, within Pf1N1B4_538 at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.219 kb on + strand at 637.220 kb on - strand at 637.226 kb on + strand at 637.232 kb on + strand at 637.233 kb on - strand at 637.233 kb on - strand at 637.494 kb on - strand, within Pf1N1B4_539 at 637.539 kb on - strand, within Pf1N1B4_539 at 637.638 kb on - strand at 637.649 kb on + strand, within Pf1N1B4_539 at 637.649 kb on + strand, within Pf1N1B4_539 at 637.650 kb on - strand, within Pf1N1B4_539 at 637.723 kb on - strand at 637.723 kb on - strand at 637.723 kb on - strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.724 kb on + strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.725 kb on - strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.775 kb on + strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.776 kb on - strand at 637.815 kb on + strand at 637.868 kb on - strand at 637.876 kb on + strand at 637.876 kb on + strand at 637.876 kb on + strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.877 kb on - strand at 637.886 kb on + strand at 638.158 kb on + strand, within Pf1N1B4_540 at 638.158 kb on + strand, within Pf1N1B4_540 at 638.158 kb on + strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540 at 638.159 kb on - strand, within Pf1N1B4_540
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM remove 635,361 + -0.3 635,500 + +1.7 635,500 + +1.2 635,518 - -0.8 635,760 + -0.3 635,760 + Pf1N1B4_537 0.28 -1.1 635,760 + Pf1N1B4_537 0.28 -0.1 635,761 - Pf1N1B4_537 0.28 -0.1 635,761 - Pf1N1B4_537 0.28 -2.3 635,761 - Pf1N1B4_537 0.28 -0.2 635,761 - Pf1N1B4_537 0.28 -0.4 635,761 - Pf1N1B4_537 0.28 +1.0 635,761 - Pf1N1B4_537 0.28 -0.3 635,761 - Pf1N1B4_537 0.28 -0.5 635,761 - Pf1N1B4_537 0.28 +0.8 635,761 - Pf1N1B4_537 0.28 -0.6 635,761 - Pf1N1B4_537 0.28 -0.6 635,761 - Pf1N1B4_537 0.28 -0.3 635,761 - Pf1N1B4_537 0.28 +0.7 635,761 - Pf1N1B4_537 0.28 +0.2 635,823 + Pf1N1B4_537 0.37 +1.8 635,823 + Pf1N1B4_537 0.37 +0.3 635,824 - Pf1N1B4_537 0.37 +0.2 635,824 - Pf1N1B4_537 0.37 -0.3 635,824 - Pf1N1B4_537 0.37 +0.2 635,834 + Pf1N1B4_537 0.38 -0.2 636,054 + Pf1N1B4_537 0.69 +0.8 636,054 + Pf1N1B4_537 0.69 -1.1 636,054 + Pf1N1B4_537 0.69 +0.0 636,055 - Pf1N1B4_537 0.69 -0.6 636,099 + Pf1N1B4_537 0.75 +1.2 636,099 + Pf1N1B4_537 0.75 -2.4 636,100 - Pf1N1B4_537 0.75 -0.9 636,100 - Pf1N1B4_537 0.75 +0.2 636,114 - Pf1N1B4_537 0.77 +1.2 636,171 + Pf1N1B4_537 0.85 -2.2 636,171 + Pf1N1B4_537 0.85 +0.5 636,172 - Pf1N1B4_537 0.85 +0.2 636,210 + +2.8 636,224 + +0.2 636,224 + -0.3 636,270 + -0.3 636,270 + +0.2 636,271 - -0.0 636,271 - -0.2 636,271 - +1.2 636,271 - -1.3 636,271 - +0.0 636,273 + -0.3 636,273 + +0.4 636,475 + Pf1N1B4_538 0.14 -1.6 636,476 - Pf1N1B4_538 0.14 -0.6 636,699 - +0.2 636,784 + Pf1N1B4_538 0.50 -0.7 637,219 + -0.4 637,219 + -0.4 637,219 + +0.3 637,219 + +3.0 637,219 + -0.7 637,220 - -0.8 637,226 + -2.4 637,232 + +0.8 637,233 - +1.2 637,233 - +1.0 637,494 - Pf1N1B4_539 0.39 -0.5 637,539 - Pf1N1B4_539 0.50 -1.1 637,638 - +0.2 637,649 + Pf1N1B4_539 0.78 -0.4 637,649 + Pf1N1B4_539 0.78 -0.7 637,650 - Pf1N1B4_539 0.78 -1.0 637,723 - +0.2 637,723 - -0.4 637,723 - -0.3 637,724 + +0.2 637,724 + -0.1 637,724 + +0.8 637,724 + +0.2 637,724 + -1.9 637,725 - -1.3 637,725 - +0.1 637,725 - -2.0 637,725 - -0.8 637,725 - +0.2 637,725 - -0.2 637,725 - +0.2 637,725 - -0.4 637,725 - -0.9 637,775 + +0.7 637,775 + -0.6 637,775 + +0.7 637,775 + -0.8 637,776 - -0.2 637,776 - +0.2 637,776 - -0.0 637,776 - -2.2 637,776 - +0.7 637,776 - -0.9 637,776 - +1.2 637,776 - -0.2 637,776 - +0.2 637,776 - +1.2 637,776 - +0.7 637,815 + -1.1 637,868 - -1.4 637,876 + -1.8 637,876 + +0.2 637,876 + -1.8 637,877 - +0.3 637,877 - +0.5 637,877 - +0.2 637,877 - -1.0 637,886 + +0.0 638,158 + Pf1N1B4_540 0.30 -0.4 638,158 + Pf1N1B4_540 0.30 -0.6 638,158 + Pf1N1B4_540 0.30 -1.8 638,159 - Pf1N1B4_540 0.30 +0.5 638,159 - -0.4 638,159 - Pf1N1B4_540 0.30 -0.6 638,159 - -0.4 638,159 - Pf1N1B4_540 0.30 -0.4 638,159 - Pf1N1B4_540 0.30 +1.2 638,159 - Pf1N1B4_540 0.30 +0.2
Or see this region's nucleotide sequence